https://pinboard.in/u:jschneider/public/ recent bookmarks from jschneider 2020-09-11T14:06:56+00:00 http://scigendetection.imag.fr/TPD52/Va/ jschneidergenomics reproducibility Seek & Blastn tools research-integrity https://pinboard.in/ https://pinboard.in/u:jschneider/b:bf42e71450b6/ 2020-09-11T14:04:28+00:00 https://science.sciencemag.org/content/sci/suppl/2020/03/03/science.abb2762.DC1/abb2762_MDAR_Reproducibility_Checklist.pdf jschneiderMDAR reproducibility checklists https://pinboard.in/ https://pinboard.in/u:jschneider/b:c5c6c0367c76/ 2020-05-22T20:30:00+00:00 https://www.washingtonpost.com/science/rock-samples-arent-archived-or-shared-they-need-to-be-geologists-warn-pointing-to-a-reproducibility-crisis/2020/05/15/aa858e06-953c-11ea-91d7-cf4423d47683_story.html jschneidergeology reproducibility samples archiving https://pinboard.in/ https://pinboard.in/u:jschneider/b:8ac3cd11430c/ 2019-12-26T16:25:39+00:00 https://sciscore.com/ jschneidermethods reproducibility STAR https://pinboard.in/ https://pinboard.in/u:jschneider/b:0d26b9558b80/ 2019-03-16T04:00:10+00:00 https://snakemake.readthedocs.io/en/stable/ jschneiderworkflow make python reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:2111d475597d/ 2019-02-12T02:57:34+00:00 https://docs.google.com/document/d/16JpGOqXO2KsPCU13otoonS2_I3zNnrudz8QHX_KxJZc/edit jschneiderreproducibility replicability https://pinboard.in/ https://pinboard.in/u:jschneider/b:a1cf7f430f5f/ 2019-01-27T00:12:09+00:00 https://www.cwts.nl/blog?article=n-r2v2a4&title=the-humanities-do-not-need-a-replication-drive jschneiderreplication reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:4753b0a9f477/ 2018-06-28T15:40:38+00:00 https://popper.readthedocs.io/en/latest/ jschneiderpopper reproducibility sciops devops https://pinboard.in/ https://pinboard.in/u:jschneider/b:1af39838d24d/ 2018-06-28T15:40:32+00:00 http://falsifiable.us/ jschneiderpopper reproducibility sciops devops https://pinboard.in/ https://pinboard.in/u:jschneider/b:d5290daad89c/ 2018-06-28T15:37:39+00:00 https://users.soe.ucsc.edu/~ivo/ jschneiderpeople reproducibility popper sciops devops https://pinboard.in/ https://pinboard.in/u:jschneider/b:e50ee317f4e6/ 2018-03-25T15:47:26+00:00 https://twitter.com/cristalopes/status/972338230702981120 jschneiderreproducibility machine-learning https://pinboard.in/ https://pinboard.in/u:jschneider/b:38d19b24bf6e/ 2018-02-02T03:46:48+00:00 https://www.acm.org/publications/policies/artifact-review-badging jschneiderreproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:45df64dddfdf/ 2017-11-13T18:50:35+00:00 https://twitter.com/hashtag/MakeResearchTrue?src=hash jschneiderreproducibility science #MakeResearchTrue https://pinboard.in/ https://pinboard.in/u:jschneider/b:2a343bb5e1b5/ 2017-09-04T17:14:18+00:00 https://www.aip.org/fyi/2017/national-academies-kicks-open-science-study jschneider reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:066fc91cd8c1/ 2017-07-25T16:02:21+00:00 http://www.scm.keele.ac.uk/staff/b_olorisade/ jschneiderpeople Keele reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:ca18e7688ddb/ 2017-05-09T20:33:41+00:00 http://refigure.org/ jschneiderreproducibility figures https://pinboard.in/ https://pinboard.in/u:jschneider/b:3c31b947fc93/ 2017-05-01T05:11:25+00:00 https://codeocean.com/ jschneidercode computing cloud reproducibility executables https://pinboard.in/ https://pinboard.in/u:jschneider/b:edf28f9e6781/ 2017-03-08T02:31:54+00:00 http://ivory.idyll.org/blog/will-you-join-my-committee.html jschneiderreproducibility committees https://pinboard.in/ https://pinboard.in/u:jschneider/b:f1a9f7fba72a/ 2017-01-23T00:44:31+00:00 https://cos.io/our-services/research/rpcb-overview/ jschneiderreproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:b8d42f9f354e/ 2017-01-23T00:44:03+00:00 https://osf.io/e81xl/wiki/home/ jschneiderreproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:ec9d2a90a64c/ 2017-01-01T17:40:32+00:00 https://replicationindex.wordpress.com/ jschneiderreplication psychology reproducibility research https://pinboard.in/ https://pinboard.in/u:jschneider/b:c0b144a375b2/ 2016-12-11T01:01:13+00:00 http://ischool.illinois.edu/articles/2016/12/report-proposes-standards-sharing-data-and-code-used-computational-studies jschneiderdata-analytics reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:ec16d839bf0f/ 2016-11-21T19:52:24+00:00 http://fged.org/ jschneiderfunctional-genomics reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:30fa75272045/ 2016-08-06T21:03:11+00:00 http://simplystatistics.org/2015/12/11/instead-of-research-on-reproducibility-just-do-reproducible-research/ jschneiderreproducibility openscience https://pinboard.in/ https://pinboard.in/u:jschneider/b:447f835be4f5/ 2016-07-28T03:54:05+00:00 https://scholar.google.com/citations?hl=en&user=ZvYwdsUAAAAJ&view_op=list_works&sortby=pubdate jschneiderpeople reproducibility scholarly-communication https://pinboard.in/ https://pinboard.in/u:jschneider/b:ce554ba6c7ae/ 2016-02-26T17:01:18+00:00 https://osf.io/tazyx/ jschneider workshops reproducibility statistics OSF https://pinboard.in/ https://pinboard.in/u:jschneider/b:fc888731a9c3/ 2016-02-07T16:10:17+00:00 http://www.the-scientist.com/?articles.view/articleNo/8286/title/NIH-s-Raub-on-Misconduct/ jschneiderpeople NIH reproducibility research https://pinboard.in/ https://pinboard.in/u:jschneider/b:fe128b9f5027/ 2015-10-29T17:51:45+00:00 http://chronicle.com/article/How-to-Fix-Psychology-s/233857?cid=at&elq=79ddd185ba344ee385b8144efdae730f&elqCampaignId=1697&elqaid=6688&elqat=1&elqTrackId=ffd568b276aa4a30804c90824e34b8d9 jschneider Chronicle reproducibility graduate-training https://pinboard.in/ https://pinboard.in/u:jschneider/b:203fba7f13ec/ 2015-09-04T00:59:26+00:00 http://chronicle.com/article/The-Results-of-the/232695/?cid=at jschneider reproducibility Chronicle psychology https://pinboard.in/ https://pinboard.in/u:jschneider/b:d1e3d06aae82/ 2015-04-12T06:53:01+00:00 http://www.timeshighereducation.co.uk/news/why-publish-and-be-so-damned-hard-to-find/2019144.article jschneider JISC Carole-Goble open-access reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:4c9eb5eaeccf/ 2015-03-30T11:21:55+00:00 https://www.evernote.com/shard/s65/sh/d08c9e02-ecd2-46d6-863b-c1ea3a377dab/d2fadc01f1ab85ba jschneiderpreservation bigdata datacuration reproducibility challenges https://pinboard.in/ https://pinboard.in/u:jschneider/b:1ad04eb1a889/ 2015-03-22T20:15:08+00:00 https://www.protocols.io/ jschneiderreproducibility opensource protocols https://pinboard.in/ https://pinboard.in/u:jschneider/b:5ac46079c9fb/ 2015-03-16T23:14:38+00:00 http://www.nature.com/authors/policies/checklist.pdf jschneiderchecklists reviewing peer-review reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:15d070e3f0e1/ 2015-01-29T21:50:02+00:00 http://db-reproducibility.seas.harvard.edu/ jschneiderdatabases research reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:47804903c6ab/ 2015-01-13T17:50:39+00:00 http://www.riffyn.com/about jschneiderquality reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:d6d7c1c237b2/ 2015-01-13T12:17:13+00:00 http://www.activepapers.org/python-edition/tutorial.html jschneiderpapers activepapers reproducibility computational-science https://pinboard.in/ https://pinboard.in/u:jschneider/b:e2dc309a5f33/ 2015-01-13T09:42:13+00:00 http://validation.scienceexchange.com/#/reproducibility-initiative jschneiderreproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:d496f280e7a2/ 2015-01-13T09:41:38+00:00 https://osf.io/ezcuj/wiki/hom jschneideropenscience reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:5e2d8163dd2c/ 2014-10-10T13:48:49+00:00 http://softwarediscoveryindex.org/report/ jschneider software reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:d7c0fea8c98f/ 2014-10-08T12:29:02+00:00 http://www.incf.org/activities/our-programs/datasharing/neuroimaging-task-force jschneiderneuroimaging task-forces reproducibility metadata https://pinboard.in/ https://pinboard.in/u:jschneider/b:d78d5b722ff2/ 2014-10-02T16:20:38+00:00 http://elifesciences.org/eLife-the-Center-for-Open-Science-and-Science-Exchange-partner-to-assess-the-reproducibility-of-cancer-biology-research jschneidercancer replication reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:43aaa77e03d3/ 2014-09-19T07:27:00+00:00 https://osf.io/8mpji/ jschneiderregistered-reports reproducibility peer-review research https://pinboard.in/ https://pinboard.in/u:jschneider/b:ae135d783b47/ 2014-08-06T13:24:16+00:00 http://www.runmycode.org/ jschneideropenscience research reproducibility programming https://pinboard.in/ https://pinboard.in/u:jschneider/b:4b96761e2e5d/ 2014-08-06T13:20:42+00:00 http://blogs.biomedcentral.com/bmcblog/2012/04/04/labarchives-and-biomed-central-a-new-platform-for-publishing-scientific-data/ jschneiderdata reproducibility openscience CC0 https://pinboard.in/ https://pinboard.in/u:jschneider/b:5399fc70a391/ 2014-08-06T13:16:31+00:00 http://footnote1.com/making-scientific-research-more-reliable-by-addressing-the-%E2%80%9Creproducibility-problem%E2%80%9D/ jschneiderreproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:ed2fff6815ec/ 2014-08-06T13:14:11+00:00 http://footnote1.com/why-biomedical-research-has-a-reproducibility-problem/ jschneider reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:3f34a4356d09/ 2014-08-06T13:12:54+00:00 http://www.biotechniques.com/BiotechniquesJournal/2014/March/The-Antibody-Challenge/biotechniques-350688.html?service=print jschneiderantibodies reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:d9b055e54f80/ 2014-07-27T16:13:37+00:00 http://blog.neuinfo.org/index.php/essays/rrids-are-in-the-wild-thanks-to-jcn-and-peerj jschneiderresources identifiers reproducibility typesetting https://pinboard.in/ https://pinboard.in/u:jschneider/b:6e56be221e7b/ 2014-07-27T16:11:56+00:00 https://www.force11.org/resource_identification_initiative jschneiderreproducibility Force11 data https://pinboard.in/ https://pinboard.in/u:jschneider/b:150e1a588566/ 2014-07-16T14:26:58+00:00 http://www.ifs.tuwien.ac.at/~andi/ jschneiderpeople researchers preservation reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:6d5f374fd456/ 2014-03-27T09:31:22+00:00 http://recomputation.org/blog/2013/04/21/not-a-lot-about-excel-and-some-links/ jschneiderreproducibility licensing https://pinboard.in/ https://pinboard.in/u:jschneider/b:f1cb980a2385/ 2014-03-27T09:30:51+00:00 http://recomputation.org/ jschneidercomputational-science Scotland reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:55fbd799724e/ 2013-11-04T12:38:18+00:00 http://www.researchobject.org/ jschneiderresearch-objects reproducibility data-curation https://pinboard.in/ https://pinboard.in/u:jschneider/b:6c0e1bab5c0d/ 2013-10-08T23:59:58+00:00 http://ptsefton.com/2013/09/10/round-table-on-vocabularies-for-describing-research-data-wheres-my-semantic-web.htm jschneidersemanticweb vocabularies markdown reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:d12a79f9be24/ 2013-09-14T19:43:17+00:00 https://peerj.com/articles/148/ jschneiderrep reproducibility research science https://pinboard.in/ https://pinboard.in/u:jschneider/b:fb6a6f6aec15/ 2013-03-20T14:26:36+00:00 http://vgc.poly.edu/~fchirigati/ jschneider people reproducibility data https://pinboard.in/ https://pinboard.in/u:jschneider/b:ac70a2c9dc98/ 2013-03-20T14:08:25+00:00 http://figshare.com/blog/The_Reproducibility_Initiative_aims_to_identify_and_reward_high_quality_reproducible_research/74 jschneider reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:014974a5fab5/ 2013-03-20T10:41:06+00:00 http://galaxy.cbiit.cuhk.edu.hk/ jschneider reproducibility data-sharing https://pinboard.in/ https://pinboard.in/u:jschneider/b:57ebe2f06998/ 2013-03-20T10:35:35+00:00 http://www.slideshare.net/GigaScience/scott-edmunds-flashtalk-slides-from-beyond-the-pdf2 jschneider reproducibility gigascience btpdf2 https://pinboard.in/ https://pinboard.in/u:jschneider/b:9b7a4e1953ba/ 2012-11-24T16:13:57+00:00 http://replichi.org/?page_id=187 jschneiderreplication HCI reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:73e94aa996f6/ 2012-08-24T18:58:40+00:00 https://www.scienceexchange.com/reproducibility jschneider reproducibility science https://pinboard.in/ https://pinboard.in/u:jschneider/b:48321412a589/ 2012-07-15T18:57:37+00:00 http://ivory.idyll.org/blog/replication-i.html jschneider cs reproducibility replication https://pinboard.in/ https://pinboard.in/u:jschneider/b:9a258a86dea1/ 2012-07-15T18:56:40+00:00 http://www.scimatic.com/node/361 jschneider reproducibility replication openscience argdiscuss https://pinboard.in/ https://pinboard.in/u:jschneider/b:c07671a25a86/ 2012-06-11T11:23:45+00:00 http://blogs.nature.com/eresearch/2012/06/10/more-rs-than-pirates jschneider research reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:c907fd72c88d/ 2012-05-06T05:01:34+00:00 http://ariddell.org/weblog/2011/05/30/reconstructing-graphs-maps-trees/ jschneiderWe should care about the reconstructability of the periodizations for two reasons. First, any corrections or adjustments might well diminish the observed clustering of the genres, weakening important claims in "Graphs" (see pp. 17-30). Second, for interested students and researchers any difficulty in reconstructing the data is unwelcoming. Those who, having read through "Graphs," want to pursue the project further will likely turn to the expert studies cited. Differences between Moretti's periodizations and those of the genre experts he cites risk creating confusion. For a nascent research field within literary studies, this would be regrettable. "A list of periods can be viewed as describing a process consisting of a sequence of arrivals and departures (or births and deaths). This kind of data occurs often in historical research.""any research program benefits from some "worked examples" that are reproducible in detail. "]]> reproducibility periodization https://pinboard.in/ https://pinboard.in/u:jschneider/b:348309a3f3dc/ 2012-04-24T14:30:28+00:00 http://www.nytimes.com/2011/07/08/health/research/08genes.html?_r=2 jschneider nytimes cancer statistics datacuration reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:d22a9fd8778c/ 2011-10-17T12:31:34+00:00 http://sciencecodemanifesto.org/ jschneidersoftware science reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:df0205912823/ 2011-08-21T22:15:09+00:00 http://www.asis.org/Bulletin/Aug-11/AugSep11_Buckland.html jschneider data bibliographies preservation reproducibility https://pinboard.in/ https://pinboard.in/u:jschneider/b:7f4b5bcf83d4/ 2011-06-24T11:12:03+00:00 http://dirac.cnrs-orleans.fr/plone/software/activepapers/ jschneider beyondthepdf reproducibility data datacuration https://pinboard.in/ https://pinboard.in/u:jschneider/b:217d0432d88b/ 2011-06-23T16:08:58+00:00 http://cacm.acm.org/blogs/blog-cacm/109916-on-the-importance-of-replication-in-hci-and-social-computing-research/fulltext jschneider reproducibility information visual-attention information-scent HCI social-computing https://pinboard.in/ https://pinboard.in/u:jschneider/b:ab25b05b1cca/