Pinboard (cshalizi) https://pinboard.in/u:cshalizi/public/ recent bookmarks from cshalizi Investigating the methodological foundation of lesion network mapping | Nature Neuroscience 2026-02-07T20:26:58+00:00 https://www.nature.com/articles/s41593-025-02196-7 cshalizi to:NB neuroscience network_data_analysis evisceration functional_connectivity via:? have_read https://pinboard.in/ https://pinboard.in/u:cshalizi/b:2dc87b1031bb/ [2308.06220] Nonlinear Permuted Granger Causality 2023-12-10T20:59:10+00:00 https://arxiv.org/abs/2308.06220 cshalizi in_NB granger_causality functional_connectivity time_series https://pinboard.in/ https://pinboard.in/u:cshalizi/b:ddf399135a46/ Network Inference Using the Hub Model and Variants: Journal of the American Statistical Association: Vol 0, No ja 2023-03-18T13:57:06+00:00 https://www.tandfonline.com/doi/abs/10.1080/01621459.2023.2183133 cshalizi inference_to_latent_objects functional_connectivity network_data_analysis time_series to_read bickel.peter in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:fdee119e04f3/ [2106.03523] A stylised view on structural and functional connectivity in dynamical processes in networks 2021-06-10T02:03:41+00:00 https://arxiv.org/abs/2106.03523 cshalizi to:NB dynamical_systems networks functional_connectivity synchronization https://pinboard.in/ https://pinboard.in/u:cshalizi/b:23617071a49b/ Statistical Connectomics | Annual Review of Statistics and Its Application 2021-06-01T13:39:53+00:00 https://www.annualreviews.org/doi/abs/10.1146/annurev-statistics-042720-023234 cshalizi to:NB network_data_analysis neural_data_analysis functional_connectivity statistics https://pinboard.in/ https://pinboard.in/u:cshalizi/b:739cdc3e6cc1/ [2104.11666] Modelling the very large-scale connectome 2021-04-26T14:49:59+00:00 https://arxiv.org/abs/2104.11666 cshalizi to:NB functional_connectivity phase_transitions https://pinboard.in/ https://pinboard.in/u:cshalizi/b:5beaaeafc64c/ [2012.08667] An information-theoretic framework to measure the dynamic interaction between neural spike trains 2020-12-17T15:22:45+00:00 https://arxiv.org/abs/2012.08667 cshaliziY and Y->X. Building on recent work which derived theoretical expressions and consistent estimators for the TE in continuous time, we develop algorithms for estimating efficiently all measures in our framework through nearest neighbor statistics. These algorithms are validated in simulations of independent and coupled spike train processes, showing the accuracy of dMI and TE in the assessment of undirected and directed interactions even for weakly coupled and short realizations, and proving the superiority of the continuous-time estimator over the discrete-time method. Then, the usefulness of the framework is illustrated in a real data scenario of recordings from in-vitro preparations of spontaneously-growing cultures of cortical neurons, where we show the ability of dMI and TE to identify how the networks of undirected and directed spike train interactions change their topology through maturation of the neuronal cultures." --- Compare to https://arxiv.org/abs/q-bio/0506009]]> to:NB functional_connectivity neural_data_analysis information_theory https://pinboard.in/ https://pinboard.in/u:cshalizi/b:d9a144af0370/ [2007.07500] Inferring network properties from time series using transfer entropy and mutual information: validation of multivariate versus bivariate approaches 2020-11-26T15:49:35+00:00 https://arxiv.org/abs/2007.07500 cshalizi to:NB time_series functional_connectivity network_data_analysis https://pinboard.in/ https://pinboard.in/u:cshalizi/b:7c9d058e83cb/ [2011.10079] Improving Functional Connectome Fingerprinting with Degree-Normalization 2020-11-23T17:35:24+00:00 https://arxiv.org/abs/2011.10079 cshalizi to:NB functional_connectivity network_data_analysis re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:a0481b33f03b/ Donnet , Rivoirard , Rousseau : Nonparametric Bayesian estimation for multivariate Hawkes processes 2020-11-18T22:50:20+00:00 https://projecteuclid.org/euclid.aos/1600480929 cshalizi to:NB point_processes functional_connectivity bayesian_consistency nonparametrics statistics https://pinboard.in/ https://pinboard.in/u:cshalizi/b:4b84047a5538/ [2011.06723] Community detection in network neuroscience 2020-11-16T14:32:46+00:00 https://arxiv.org/abs/2011.06723 cshalizi to:NB community_discovery network_data_analysis neural_data_analysis neuroscience functional_connectivity https://pinboard.in/ https://pinboard.in/u:cshalizi/b:2e37da9fbe56/ Numerical Instabilities in Analytical Pipelines Lead to Large and Meaningful Variability in Brain Networks | bioRxiv 2020-10-22T12:43:39+00:00 https://www.biorxiv.org/content/10.1101/2020.10.15.341495v1 cshalizi to:NB scientific_computing data_analysis functional_connectivity neuroscience statistics network_data_analysis https://pinboard.in/ https://pinboard.in/u:cshalizi/b:766c125979dc/ [1811.08763] Comparison of Brain Networks based on Predictive Models of Connectivity 2019-11-09T23:25:56+00:00 https://arxiv.org/abs/1811.08763 cshalizi to:NB functional_connectivity fmri neuroscience re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:32d86143e10e/ [1901.08521] Brain Network Topology Maps the Dysfunctional Substrate of Cognitive Processes in Schizophrenia 2019-10-29T14:27:09+00:00 https://arxiv.org/abs/1901.08521 cshalizi to:NB functional_connectivity neural_data_analysis fmri schizophrenia re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:cbd82d06c504/ [1905.10413] Modeling Dynamic Functional Connectivity with Latent Factor Gaussian Processes 2019-05-28T16:47:23+00:00 https://arxiv.org/abs/1905.10413 cshalizi to:NB functional_connectivity inference_to_latent_objects neural_data_analysis statistics https://pinboard.in/ https://pinboard.in/u:cshalizi/b:62f1c74ee688/ Rich club organization and intermodule communication in the cat connectome. - PubMed - NCBI 2019-03-27T16:40:42+00:00 https://www.ncbi.nlm.nih.gov/pubmed/23926249 cshalizi to:NB have_read neuroscience functional_connectivity network_data_analysis re:friday_science_cat_blogging https://pinboard.in/ https://pinboard.in/u:cshalizi/b:2c68a028bec8/ [1809.02512] Multi-level hypothesis testing for populations of heterogeneous networks 2018-09-19T14:25:08+00:00 https://arxiv.org/abs/1809.02512 cshalizi to_read re:network_differences network_data_analysis statistics hypothesis_testing functional_connectivity neuroscience neville.jennifer in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:062f9a168404/ Discovering Brain Mechanisms Using Network Analysis and Causal Modeling | SpringerLink 2018-06-23T16:08:17+00:00 https://link.springer.com/article/10.1007/s11023-017-9447-0 cshalizi to:NB neuroscience functional_connectivity explanation_by_mechanisms causal_discovery statistics philosophy_of_science https://pinboard.in/ https://pinboard.in/u:cshalizi/b:3195e41e398d/ Extracting neuronal functional network dynamics via adaptive Granger causality analysis | PNAS 2018-05-07T22:27:23+00:00 http://www.pnas.org/content/115/17/E3869 cshalizi to:NB neural_data_analysis time_series functional_connectivity statistics https://pinboard.in/ https://pinboard.in/u:cshalizi/b:21dbba3eabbf/ Spontaneous default network activity reflects behavioral variability independent of mind-wandering 2016-12-09T16:12:13+00:00 http://www.pnas.org/content/113/48/13899.abstract cshalizi to:NB fmri neural_data_analysis functional_connectivity neuroscience attention https://pinboard.in/ https://pinboard.in/u:cshalizi/b:1bff8d7afaed/ [1511.02976] Dynamic fluctuations in global brain network topology characterize functional states during rest and behavior 2016-02-15T21:09:17+00:00 http://arxiv.org/abs/1511.02976 cshalizi to:NB to_read functional_connectivity neural_data_analysis neuroscience network_data_analysis re:network_differences poldrack.russell https://pinboard.in/ https://pinboard.in/u:cshalizi/b:e6b27240f6c4/ A Statistical Framework to Infer Delay and Direction of Information Flow from Measurements of Complex Systems 2015-07-20T20:29:09+00:00 http://www.mitpressjournals.org/doi/abs/10.1162/NECO_a_00756 cshalizi to:NB information_theory time_series statistics functional_connectivity https://pinboard.in/ https://pinboard.in/u:cshalizi/b:e7d2b98e7c4b/ Lag threads organize the brain’s intrinsic activity 2015-05-01T13:52:42+00:00 http://www.pnas.org/content/112/17/E2235.abstract cshalizi to:NB neuroscience fmri functional_connectivity spatio-temporal_statistics https://pinboard.in/ https://pinboard.in/u:cshalizi/b:ab119b57822b/ Altered resting state complexity in schizophrenia. - PubMed - NCBI 2015-03-30T16:51:52+00:00 http://www.ncbi.nlm.nih.gov/pubmed/22008374 cshalizi to:NB complexity_measures functional_connectivity schizophrenia neuroscience network_data_analysis fmri re:network_differences bassett.danielle_s. https://pinboard.in/ https://pinboard.in/u:cshalizi/b:eca9200a964d/ Breakdown of the brain’s functional network modularity with awareness 2015-03-28T14:02:40+00:00 http://www.pnas.org/content/112/12/3799.abstract.html cshalizi to:NB to_read neuroscience functional_connectivity consciousness community_discovery https://pinboard.in/ https://pinboard.in/u:cshalizi/b:c65e57b48d99/ [1407.5525] Hypothesis Testing For Network Data in Functional Neuroimaging 2015-01-20T02:42:11+00:00 http://arxiv.org/abs/1407.5525 cshalizi to:NB to_read functional_connectivity fmri neuroscience network_data_analysis re:network_differences kolaczyk.eric https://pinboard.in/ https://pinboard.in/u:cshalizi/b:7654ccf6898d/ Toward a Multisubject Analysis of Neural Connectivity 2014-12-29T02:04:33+00:00 http://www.mitpressjournals.org/doi/abs/10.1162/NECO_a_00690 cshalizi to:NB graphical_models neuroscience functional_connectivity neural_data_analysis nichols.tom_e. re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:2dc85589353c/ Network dynamics of the brain and influence of the epileptic seizure onset zone 2014-12-17T15:38:51+00:00 http://www.pnas.org/content/111/49/E5321.abstract.html?etoc cshalizi to:NB functional_connectivity neural_data_analysis neuroscience network_data_analysis re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:8bb76db78208/ Decreased segregation of brain systems across the healthy adult lifespan 2014-11-22T03:21:14+00:00 http://www.pnas.org/content/111/46/E4997.abstract.html?etoc cshalizi to:NB neuroscience functional_connectivity re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:b47597ac4ae4/ [1404.1239] Towards a Multi-Subject Analysis of Neural Connectivity 2014-04-07T17:49:11+00:00 http://arxiv.org/abs/1404.1239 cshalizi to:NB graphical_models model_discovery neuroscience functional_connectivity statistics re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:9b0ebb5141d6/ Functional Interactions as Big Data in the Human Brain 2013-12-12T01:12:09+00:00 http://www.princeton.edu/ntblab/pdfs/Turk-Browne_Science_2013.pdf cshalizi to:NB to_read functional_connectivity neuroscience neural_data_analysis entableted https://pinboard.in/ https://pinboard.in/u:cshalizi/b:c7217385d990/ Cortical connectivity and sensory coding : Nature : Nature Publishing Group 2013-11-06T19:15:59+00:00 http://www.nature.com/nature/journal/v503/n7474/full/nature12654.html cshalizi to:NB neuroscience neural_coding_and_decoding functional_connectivity https://pinboard.in/ https://pinboard.in/u:cshalizi/b:e5af6cc370bb/ [1310.6547] Sparse Predictive Structure of Deconvolved Functional Brain Networks 2013-10-26T12:19:58+00:00 http://arxiv.org/abs/1310.6547 cshalizi to:NB functional_connectivity neural_data_analysis statistics classifiers re:network_differences re:functional_communities https://pinboard.in/ https://pinboard.in/u:cshalizi/b:a791601b407d/ Network structure and dynamics of the mental workspace 2013-10-21T15:51:12+00:00 http://www.pnas.org/content/110/40/16277.abstract cshalizi to:NB to_read functional_connectivity fmri cognitive_science https://pinboard.in/ https://pinboard.in/u:cshalizi/b:1611f6fd9bcf/ Functional and structural architecture of the human dorsal frontoparietal attention network 2013-10-21T15:46:47+00:00 http://www.pnas.org/content/110/39/15806.abstract cshalizi to:NB attention functional_connectivity neuroscience https://pinboard.in/ https://pinboard.in/u:cshalizi/b:1b870fcd9abb/ Phys. Rev. E 85, 065201 (2012): Detecting hidden nodes in complex networks from time series 2013-09-04T23:56:01+00:00 http://pre.aps.org/abstract/PRE/v85/i6/e065201 cshalizi to:NB inference_to_latent_objects time_series functional_connectivity statistics https://pinboard.in/ https://pinboard.in/u:cshalizi/b:072e598b2c52/ Cognitive relevance of the community structure of the human brain functional coactivation network 2013-09-03T13:25:45+00:00 http://www.pnas.org/content/110/28/11583.abstract cshalizi1,600 studies; 1985–2010). We estimated the similarity (Jaccard index) of the activation patterns across experimental tasks between each pair of 638 brain regions. This continuous coactivation matrix was used to build a weighted graph to characterize network topology. The coactivation network was modular, with occipital, central, and default-mode modules predominantly coactivated by specific cognitive domains (perception, action, and emotion, respectively). It also included a rich club of hub nodes, located in parietal and prefrontal cortex and often connected over long distances, which were coactivated by a diverse range of experimental tasks. Investigating the topological role of edges between a deactivated and an activated node, we found that such competitive interactions were most frequent between nodes in different modules or between an activated rich-club node and a deactivated peripheral node. Many aspects of the coactivation network were convergent with a connectivity network derived from resting state fMRI data (n = 27, healthy volunteers); although the connectivity network was more parsimoniously connected and differed in the anatomical locations of some hubs. We conclude that the community structure of human brain networks is relevant to cognitive function. Deactivations may play a role in flexible reconfiguration of the network according to cognitive demand, varying the integration between modules, and between the periphery and a central rich club."]]> to:NB functional_connectivity fmri neuroscience network_data_analysis re:functional_communities https://pinboard.in/ https://pinboard.in/u:cshalizi/b:f19f92633da2/ The Organization of Dorsal Frontal Cortex in Humans and Macaques 2013-07-26T15:57:01+00:00 http://www.jneurosci.org/content/33/30/12255.short?rss=1 cshalizi to:NB fmri functional_connectivity re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:5265816a34cd/ Connectivity profiles reveal the relationship between brain areas for social cognition in human and monkey temporoparietal cortex 2013-07-09T21:00:23+00:00 http://www.pnas.org/content/110/26/10806.abstract cshalizi to:NB neuroscience fmri functional_connectivity human_evolution evolutionary_psychology https://pinboard.in/ https://pinboard.in/u:cshalizi/b:31f9d5180daa/ [1209.0729] Intra- and Inter-Frequency Brain Network Structure in Health and Schizophrenia 2013-06-30T03:39:01+00:00 http://arxiv.org/abs/1209.0729 cshalizi to:NB schizophrenia neuroscience functional_connectivity bassett.danielle_s. https://pinboard.in/ https://pinboard.in/u:cshalizi/b:e2e8d81b547b/ Structural foundations of resting-state and task-based functional connectivity in the human brain 2013-05-17T19:10:32+00:00 http://www.pnas.org/content/110/15/6169.abstract cshalizi to:NB neuroscience fmri functional_connectivity https://pinboard.in/ https://pinboard.in/u:cshalizi/b:9c3c946f25ca/ Phys. Rev. Lett. 110, 174102 (2013): Remote Synchronization Reveals Network Symmetries and Functional Modules 2013-04-25T18:23:35+00:00 http://prl.aps.org/abstract/PRL/v110/i17/e174102 cshalizi to:NB synchronization kuramoto_model networks dynamical_systems functional_connectivity https://pinboard.in/ https://pinboard.in/u:cshalizi/b:4e1944d6808e/ [1302.5721] Analyzing complex functional brain networks: fusing statistics and network science to understand the brain 2013-03-06T15:41:17+00:00 http://arxiv.org/abs/1302.5721 cshalizi to:NB network_data_analysis fmri functional_connectivity neuroscience statistics to_read re:functional_communities https://pinboard.in/ https://pinboard.in/u:cshalizi/b:6ef068e65b6a/ Spatially clustered neuronal assemblies comprise the microstructure of synchrony in chronically epileptic networks 2013-02-27T00:45:53+00:00 http://www.pnas.org/content/110/9/3567.abstract cshalizi to:NB functional_connectivity neuroscience epilepsy synchronization https://pinboard.in/ https://pinboard.in/u:cshalizi/b:ac593b8fccf1/ [1302.5055] Resting-State Functional Connectivity in Late-Life Depression: Higher Global Connectivity and More Long Distance Connections 2013-02-21T23:40:46+00:00 http://arxiv.org/abs/1302.5055 cshalizi to:NB fmri functional_connectivity re:network_differences neuroscience depression https://pinboard.in/ https://pinboard.in/u:cshalizi/b:034236001e33/ Network Analysis Reveals Increased Integration during Emotional and Motivational Processing 2012-06-23T15:10:26+00:00 http://www.jneurosci.org/content/32/24/8361.short?rss=1 cshalizi to:NB to_read neuroscience fmri emotion functional_connectivity re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:374cf6ab5fe1/ [1206.3963] Small-world topology of functional connectivity in randomly connected dynamical systems 2012-06-23T14:53:52+00:00 http://arxiv.org/abs/1206.3963 cshalizi to:NB time_series functional_connectivity re:what_is_the_right_null_model_for_linear_regression https://pinboard.in/ https://pinboard.in/u:cshalizi/b:fbf3235d85c9/ [1206.4358] Robust Detection of Dynamic Community Structure in Networks 2012-06-23T14:32:14+00:00 http://arxiv.org/abs/1206.4358 cshalizi community_discovery time_series functional_connectivity re:functional_communities in_NB porter.mason_a. mucha.peter https://pinboard.in/ https://pinboard.in/u:cshalizi/b:4110c62d46b6/ Multiple dynamic representations in the motor cortex during sensorimotor learning : Nature : Nature Publishing Group 2012-04-26T03:19:02+00:00 http://www.nature.com/nature/journal/v484/n7395/full/nature11039.html cshalizi neuroscience functional_connectivity experimental_biology in_NB learning_in_animals https://pinboard.in/ https://pinboard.in/u:cshalizi/b:b0962deafc05/ "Neural reuse: A fundamental organizational principle of the brain" (Anderson, 2010) 2012-03-16T15:39:49+00:00 http://www.agcognition.org/papers/anderson_bbs_2010.pdf cshalizi to_read fmri neuroscience functional_connectivity modularity re:functional_communities neuropsychology cognitive_science in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:3af37a8f879d/ Neural Reuse in the Functional Organization of the Brain 2012-03-16T14:51:07+00:00 http://www.pitt.edu/~pittcntr/Events/All/Lunchtime_talks/lunchtime_2011-12/abstracts/mar_12/anderson_03-16-12.html cshalizi neuroscience cognitive_science fmri functional_connectivity modularity re:functional_communities tracked_down_references https://pinboard.in/ https://pinboard.in/u:cshalizi/b:9598147a19ee/ Emergence of Stable Functional Networks in Long-Term Human Electroencephalography 2012-02-22T21:01:41+00:00 http://www.jneurosci.org/content/32/8/2703.short?rss=1 cshalizi to:NB re:network_differences functional_connectivity neuroscience https://pinboard.in/ https://pinboard.in/u:cshalizi/b:793441b7acdf/ Phys. Rev. E 85, 011912 (2012): Interrelating anatomical, effective, and functional brain connectivity using propagators and neural field theory 2012-02-16T13:41:15+00:00 http://pre.aps.org/abstract/PRE/v85/i1/e011912 cshalizi to:NB neuroscience field_theory functional_connectivity effective_connectivity stochastic_processes https://pinboard.in/ https://pinboard.in/u:cshalizi/b:34197dfe5fc3/ Dynamic Reconfiguration of Structural and Functional Connectivity Across Core Neurocognitive Brain Networks with Development 2011-12-18T20:12:15+00:00 http://www.jneurosci.org/content/31/50/18578.short cshalizito:NB functional_connectivity neuroscience re:network_differences https://pinboard.in/ https://pinboard.in/u:cshalizi/b:b41ab9063f74/ Higher-Order Interactions Characterized in Cortical Activity 2011-12-07T23:09:47+00:00 http://www.jneurosci.org/content/31/48/17514.short?rss=1 cshalizi to:NB neuroscience functional_connectivity re:friday_cat-blogging https://pinboard.in/ https://pinboard.in/u:cshalizi/b:81659e9a51d6/ Functionally Specific Changes in Resting-State Sensorimotor Networks after Motor Learning 2011-11-26T16:13:34+00:00 http://www.jneurosci.org/content/31/47/16907.short?rss=1 cshalizi to:NB neuroscience fmri functional_connectivity https://pinboard.in/ https://pinboard.in/u:cshalizi/b:fa4a7258da9b/ [1104.3498] Upper and lower bounds for the mutual information in dynamical networks 2011-04-23T02:30:41+00:00 http://arxiv.org/abs/1104.3498 cshalizidynamical_systems lyapunov_exponents information_theory entropy_estimation in_NB functional_connectivity https://pinboard.in/u:cshalizi/b:04327fafb4c7/ Categories and Functional Units: An Infinite Hierarchical Model for Brain Activations 2011-02-16T20:21:17+00:00 http://books.nips.cc/papers/files/nips23/NIPS2010_0513.pdf cshalizineural_data_analysis graphical_models functional_connectivity re:functional_communities in_NB fmri https://pinboard.in/u:cshalizi/b:92d41fcfaff4/ [0902.2885] The Ising Model for Neural Data: Model Quality and Approximate Methods for Extracting Functional Connectivity 2010-05-03T12:48:33+00:00 http://arxiv.org/abs/0902.2885 cshalizimarkov_models random_fields ising_model neural_data_analysis functional_connectivity https://pinboard.in/u:cshalizi/b:2977a8f538b6/ [0903.0127] Prediction of spatio-temporal patterns of neural activity from pairwise correlations 2010-05-03T12:48:06+00:00 http://arxiv.org/abs/0903.0127 cshalizimarkov_models random_fields exponential_families neural_data_analysis functional_connectivity https://pinboard.in/u:cshalizi/b:25d705b693da/ [0903.3083] Measuring multiple spike train synchrony 2010-05-03T12:47:17+00:00 http://arxiv.org/abs/0903.3083 cshalizisynchronization neural_data_analysis to_read functional_connectivity https://pinboard.in/u:cshalizi/b:192e62ecebbd/ Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice : Abstract : Nature 2010-04-22T12:55:16+00:00 http://www.nature.com/nature/journal/v464/n7292/abs/nature08897.html cshalizineuroscience functional_connectivity to_read to:NB https://pinboard.in/u:cshalizi/b:2f46027268e3/ Networks of the Brain - Sporns - The MIT Press 2010-04-21T03:48:53+00:00 http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid=12288 cshalizibooks:noted functional_connectivity neuroscience information_theory sporns.olaf books:owned to_read https://pinboard.in/u:cshalizi/b:d0375ddb9fd9/ Foundational Issues in Human Brain Mapping - The MIT Press 2010-04-21T03:42:38+00:00 http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid=12130 cshalizi fmri functional_connectivity statistics books:noted books:owned https://pinboard.in/u:cshalizi/b:de4ab00c89a1/ [1004.3153] Hierarchical modularity in human brain functional networks 2010-04-20T11:23:34+00:00 http://arxiv.org/abs/1004.3153 cshalizifunctional_connectivity fmri to_read re:functional_communities https://pinboard.in/u:cshalizi/b:3fd8bfb29a55/ [1002.0697] Complex networks: new trends for the analysis of brain connectivity 2010-02-04T04:01:16+00:00 http://arxiv.org/abs/1002.0697 cshalizi re:functional_communities functional_connectivity networks neuroscience to_read https://pinboard.in/u:cshalizi/b:dac3adf84c4a/ [0902.3725] Statistical Inference of Functional Connectivity in Neuronal Networks using Frequent Episodes 2009-12-28T14:49:57+00:00 http://arxiv.org/abs/0902.3725 cshalizifunctional_connectivity neural_data_analysis to_read re:functional_communities https://pinboard.in/u:cshalizi/b:339efa555dbf/ Inferring direct directed-information flow from multivariate nonlinear time series 2009-08-04T13:04:34+00:00 http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000080000001011138000001&idtype=cvips&gifs=Yes cshalizitime_series functional_connectivity to_read statistics re:functional_communities re:stacs https://pinboard.in/u:cshalizi/b:fe25acbb1764/ PLoS Computational Biology: Broadband Criticality of Human Brain Network Synchronization 2009-07-20T14:56:54+00:00 http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000314 cshalizi neuroscience self-organized_criticality heavy_tails bad_data_analysis via:email functional_connectivity my_initial_skeptical_coloration_became_on_examination_a_permanent_stain https://pinboard.in/u:cshalizi/b:b5cdda7bd28a/ Ising-like dynamics in large-scale functional brain networks 2009-07-04T19:51:43+00:00 http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000079000006061922000001&idtype=cvips&gifs=Yes cshalizi neuroscience ising_model to:NB functional_connectivity re:functional_communities color_me_skeptical https://pinboard.in/u:cshalizi/b:dd81c659f3f2/