Pinboard (cshalizi)

Pinboard (cshalizi) https://pinboard.in/u:cshalizi/public/ recent bookmarks from cshalizi Phys. Rev. E 108, 014304 (2023) - Dynamical independence: Discovering emergent macroscopic processes in complex dynamical systems 2023-07-24T01:19:02+00:00 https://journals.aps.org/pre/abstract/10.1103/PhysRevE.108.014304 cshalizi complexity_measures information_theory via:rvenkat emergence macro_from_micro transfer_entropy in_NB have_read https://pinboard.in/ https://pinboard.in/u:cshalizi/b:ebde8153c608/ Phys. Rev. Research 2, 023219 (2020) - General anesthesia reduces complexity and temporal asymmetry of the informational structures derived from neural recordings in Drosophila 2023-04-27T12:02:04+00:00 https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.2.023219 cshalizi to:NB to_read neural_data_analysis complexity_measures https://pinboard.in/ https://pinboard.in/u:cshalizi/b:8098d4215588/ A simple measure of complexity | Nature 2023-04-24T22:11:00+00:00 https://www.nature.com/articles/336306a0 cshalizilandauer.rolf complexity_measures non-equilibrium lloyd.seth pagels.heinz_r. have_read have_taught thermodynamic_depth re:dissertation cleaning_out_the_filing_cabinet_for_the_first_time_since_2005 in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:4660baa0508b/ Complexity as thermodynamic depth - ScienceDirect 2023-04-24T22:09:13+00:00 https://www.sciencedirect.com/science/article/abs/pii/0003491688900942 cshalizi complexity_measures non-equilibrium lloyd.seth pagels.heinz_r. have_read have_taught thermodynamic_depth re:dissertation cleaning_out_the_filing_cabinet_for_the_first_time_since_2005 in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:f4f91f073b2c/ Finite automata-models for the investigation of dynamical systems - ScienceDirect 2023-04-24T22:07:58+00:00 https://www.sciencedirect.com/science/article/abs/pii/S0020019097001105 cshalizi to:NB have_read automata_theory dynamical_systems complexity_measures re:dissertation cleaning_out_the_filing_cabinet_for_the_first_time_since_2005 https://pinboard.in/ https://pinboard.in/u:cshalizi/b:7be4910aff26/ Phys. Rev. E 55, 5050 (1997) - Characterizing the dynamics of stochastic bistable systems by measures of complexity 2023-04-24T22:05:40+00:00 https://journals.aps.org/pre/abstract/10.1103/PhysRevE.55.5050 cshalizi have_read complexity_measures stochastic_processes kurths.jurgen cleaning_out_the_filing_cabinet_for_the_first_time_since_2005 re:dissertation metastability in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:ee4a2bd3bebb/ Inviting the Vampire in: Value and Thermodynamic Depth | Science & Society 2023-04-11T01:34:51+00:00 https://guilfordjournals.com/doi/pdf/10.1521/siso.2023.87.2.234 cshalizi to:NB marxism complexity_measures thermodynamic_depth https://pinboard.in/ https://pinboard.in/u:cshalizi/b:cf03cab74e8e/ [2206.02279] Assembly Theory Explains and Quantifies the Emergence of Selection and Evolution 2022-06-09T08:39:12+00:00 https://arxiv.org/abs/2206.02279 cshalizi evolutionary_biology complexity complexity_measures lachmann.michael kith_and_kin in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:ce0d1ead4858/ Integrated information as a common signature of dynamical and information-processing complexity: Chaos: An Interdisciplinary Journal of Nonlinear Science: Vol 32, No 1 2022-04-13T02:24:37+00:00 https://aip.scitation.org/doi/10.1063/5.0063384 cshalizi to:NB information_theory complexity_measures color_me_skeptical https://pinboard.in/ https://pinboard.in/u:cshalizi/b:e3b4a49d658c/ What Makes a Rule Complex? - American Economic Association 2020-11-30T16:06:01+00:00 https://www.aeaweb.org/articles?id=10.1257/aer.20191717 cshalizi to:NB complexity_measures learning_in_games experimental_economics decision-making cognitive_science https://pinboard.in/ https://pinboard.in/u:cshalizi/b:b93c403fcb3b/ A detailed characterization of complex networks using Information Theory | Scientific Reports 2020-11-19T20:12:08+00:00 https://www.nature.com/articles/s41598-019-53167-5 cshalizi to:NB information_theory complexity_measures network_data_analysis to:blog have_read my_initial_skeptical_coloration_became_on_examination_a_permanent_stain https://pinboard.in/ https://pinboard.in/u:cshalizi/b:e4d21bc5d723/ Entropy | Free Full-Text | Properties of the Statistical Complexity Functional and Partially Deterministic HMMs 2020-05-16T17:46:39+00:00 https://www.mdpi.com/1099-4300/11/3/385 cshalizi to:NB complexity_measures markov_models prediction stochastic_processes to_read re:AoS_project https://pinboard.in/ https://pinboard.in/u:cshalizi/b:7bbb0912fe69/ Phys. Rev. Lett. 100, 208702 (2008) - Using the Memories of Multiscale Machines to Characterize Complex Systems 2020-05-12T23:50:33+00:00 https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.100.208702 cshalizi to:NB complexity_measures re:AoS_project to_read color_me_skeptical https://pinboard.in/ https://pinboard.in/u:cshalizi/b:3ea37e3fcd80/ [2004.07857] Ultimate limit on time signal generation 2020-04-24T13:06:18+00:00 https://arxiv.org/abs/2004.07857 cshalizi to:NB quantum_mechanics complexity_measures color_me_skeptical https://pinboard.in/ https://pinboard.in/u:cshalizi/b:ae91b74e77d2/ Leveraging Environmental Correlations: The Thermodynamics of Requisite Variety | SpringerLink 2019-11-10T22:23:21+00:00 https://link.springer.com/article/10.1007/s10955-017-1776-0 cshalizi to:NB control_theory_and_control_engineering maxwells_demon information_theory complexity_measures crutchfield.james_p. kith_and_kin ashby.w._ross law_of_requisite_variety to_read https://pinboard.in/ https://pinboard.in/u:cshalizi/b:503af7cd0f0e/ Probing complexity: thermodynamics and computational mechanics approaches to origins studies | Interface Focus 2019-10-23T19:19:38+00:00 https://royalsocietypublishing.org/doi/full/10.1098/rsfs.2019.0058 cshalizi to:NB to_read non-equilibrium statistical_mechanics origin_of_life complexity complexity_measures self-organization flashbacks_to_my_dissertation https://pinboard.in/ https://pinboard.in/u:cshalizi/b:cee3d4db6f45/ [1909.13243] Measuring complexity 2019-10-01T15:23:44+00:00 https://arxiv.org/abs/1909.13243 cshalizi to:NB wiesner.karoline complexity_measures to_read https://pinboard.in/ https://pinboard.in/u:cshalizi/b:fe3738a40063/ [1909.02900] On the Estimation of Network Complexity: Dimension of Graphons 2019-09-09T03:45:40+00:00 https://arxiv.org/abs/1909.02900 cshalizi to:NB to_read complexity_measures graph_limits network_data_analysis re:smoothing_adjacency_matrices https://pinboard.in/ https://pinboard.in/u:cshalizi/b:47ae48949e23/ [1905.13173] Distinguishing states of conscious arousal using statistical complexity 2019-08-05T12:45:27+00:00 https://arxiv.org/abs/1905.13173 cshalizi to:NB complexity_measures neural_data_analysis consciousness CSSR i_dont_know_you_people color_me_skeptical https://pinboard.in/ https://pinboard.in/u:cshalizi/b:74c71b413fb3/ Quantitative historical analysis uncovers a single dimension of complexity that structures global variation in human social organization 2018-01-09T20:46:25+00:00 http://www.pnas.org/content/115/2/E144.abstract.html cshalizi to:NB to_read comparative_history complexity_measures principal_components to_teach:undergrad-ADA color_me_skeptical https://pinboard.in/ https://pinboard.in/u:cshalizi/b:fc1b60107b6e/ Phys. Rev. E 95, 042140 (2017) - Thermodynamics of complexity and pattern manipulation 2017-06-23T17:00:16+00:00 https://journals.aps.org/pre/abstract/10.1103/PhysRevE.95.042140 cshalizi to:NB to_read complexity complexity_measures prediction thermodynamics maxwells_demon https://pinboard.in/ https://pinboard.in/u:cshalizi/b:461e0c65660b/ Altered resting state complexity in schizophrenia. - PubMed - NCBI 2015-03-30T16:51:52+00:00 http://www.ncbi.nlm.nih.gov/pubmed/22008374 cshalizi to:NB complexity_measures functional_connectivity schizophrenia neuroscience network_data_analysis fmri re:network_differences bassett.danielle_s. https://pinboard.in/ https://pinboard.in/u:cshalizi/b:eca9200a964d/ [cs/0508075] Complexity of Networks 2014-09-03T18:44:31+00:00 http://arxiv.org/abs/cs/0508075 cshalizi to:NB complexity_measures network_data_analysis https://pinboard.in/ https://pinboard.in/u:cshalizi/b:a8265cf69088/ Max-Plus Objects to Study the Complexity of Graphs - Springer 2014-08-06T11:13:21+00:00 http://link.springer.com/article/10.1007/s11009-012-9311-x cshalizi to:NB graph_theory complexity_measures network_data_analysis https://pinboard.in/ https://pinboard.in/u:cshalizi/b:1ddf520584aa/ [1405.6903] Quantifying the Rise and Fall of Complexity in Closed Systems: The Coffee Automaton 2014-06-04T12:37:20+00:00 http://arxiv.org/abs/1405.6903 cshalizi to:NB to_read statistical_mechanics non-equilibrium arrow_of_time complexity_measures aaronson.scott carroll.sean to:blog https://pinboard.in/ https://pinboard.in/u:cshalizi/b:4663e7aecc54/ Quantifying causal emergence shows that macro can beat micro 2014-05-02T15:24:17+00:00 http://www.pnas.org/content/early/2013/11/12/1314922110.abstract cshalizi to:NB to_read emergence information_theory complexity_measures re:what_is_a_macrostate https://pinboard.in/ https://pinboard.in/u:cshalizi/b:a9216045af4b/ CID: an efficient complexity-invariant distance for time series - Springer 2014-02-19T02:47:38+00:00 http://link.springer.com/article/10.1007/s10618-013-0312-3 cshalizi to:NB time_series clustering classifiers data_mining complexity_measures statistics https://pinboard.in/ https://pinboard.in/u:cshalizi/b:b818e22f6c68/ [1309.3792] Exact Complexity: The Spectral Decomposition of Intrinsic Computation 2013-09-17T20:32:04+00:00 http://arxiv.org/abs/1309.3792 cshalizi to:NB spectral_methods complexity_measures information_theory markov_models kith_and_kin crutchfield.james_p. stochastic_processes re:AoS_project https://pinboard.in/ https://pinboard.in/u:cshalizi/b:834717f3080a/ [1305.3801] Symbolic Complexity for Nucleotide Sequences: A Sign of the Genome Structure 2013-05-17T12:07:48+00:00 http://arxiv.org/abs/1305.3801 cshalizi to:NB complexity_measures bioinformatics symbolic_dynamics https://pinboard.in/ https://pinboard.in/u:cshalizi/b:c106154c11ea/ [1304.8046] Sophistication vs Logical Depth 2013-05-01T16:31:26+00:00 http://arxiv.org/abs/1304.8046 cshalizi complexity_measures algorithmic_information_theory in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:70e58f3eaa99/ Statistical method for comparing the level of intracellular organization between cells 2013-03-13T04:22:14+00:00 http://www.pnas.org/content/110/11/E1006.abstract cshalizi to:NB biological_organization biology complexity_measures https://pinboard.in/ https://pinboard.in/u:cshalizi/b:3b30624226cd/ [1301.4211] Information-related complexity: a problem-oriented approach 2013-02-18T19:13:17+00:00 http://arxiv.org/abs/1301.4211 cshalizi to:NB complexity_measures information_theory https://pinboard.in/ https://pinboard.in/u:cshalizi/b:2319c6abb7a4/ [1212.3896] Predictive information in a nonequilibrium critical model 2013-01-13T02:33:35+00:00 http://arxiv.org/abs/1212.3896 cshalizi to:NB statistical_mechanics complexity_measures information_theory phase_transitions https://pinboard.in/ https://pinboard.in/u:cshalizi/b:5065a43d3423/ [1212.5843] A geometric method for spatiotemporal coherent structure analysis 2013-01-03T03:41:33+00:00 http://arxiv.org/abs/1212.5843 cshalizi pattern_formation complexity_measures spatio-temporal_statistics re:automatic_pattern_discovery via:vaguery in_NB fourier_analysis https://pinboard.in/ https://pinboard.in/u:cshalizi/b:6e56ed05a23a/ [1212.5841] Data complexity measured by principal graphs 2012-12-27T18:52:02+00:00 http://arxiv.org/abs/1212.5841 cshalizi to:NB to_read complexity_measures data_analysis dimension_reduction graph_theory https://pinboard.in/ https://pinboard.in/u:cshalizi/b:d210468e5073/ [1208.3459] Randomness, Information, and Complexity 2012-08-24T11:24:02+00:00 http://arxiv.org/abs/1208.3459 cshalizi have_read complexity_measures grassberger.peter in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:003df7fa07f9/ Phys. Rev. E 85, 036206 (2012): Heat diffusion: Thermodynamic depth complexity of networks 2012-03-18T21:02:02+00:00 http://pre.aps.org/abstract/PRE/v85/i3/e036206 cshalizi complexity_measures networks in_NB color_me_skeptical https://pinboard.in/ https://pinboard.in/u:cshalizi/b:bb693589a132/ [1203.3271] The thermodynamics of prediction 2012-03-18T16:07:50+00:00 http://arxiv.org/abs/1203.3271 cshalizi to:NB thermodynamics complexity_measures information_theory grumble https://pinboard.in/ https://pinboard.in/u:cshalizi/b:dac47de416ee/ [0810.5663] Effective Complexity and its Relation to Logical Depth 2012-02-24T16:46:39+00:00 http://arxiv.org/abs/0810.5663 cshalizi kith_and_kin complexity_measures ay.nihat algorithmic_information_theory in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:8d54d52943aa/ [1202.1540] Quantifying the complexity of random Boolean networks 2012-02-10T18:34:08+00:00 http://arxiv.org/abs/1202.1540 cshalizi complexity_measures random_boolean_networks to_read in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:1d1b7d3642e8/ [1111.2845] Natural Complexity, Computational Complexity and Depth 2011-11-14T17:27:18+00:00 http://arxiv.org/abs/1111.2845 cshalizicomplexity_measures computational_complexity machta.jon in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:575f40f48c91/ A geometric approach to complexity | Browse - Chaos 2011-10-05T18:31:27+00:00 http://chaos.aip.org/resource/1/chaoeh/v21/i3/p037103_s1 cshalizicomplexity_measures information_geometry ay.nihat jost.jurgen kith_and_kin to_read in_NB https://pinboard.in/ https://pinboard.in/u:cshalizi/b:694d42bc6833/ Focus Issue: Randomness, Structure, and Causality: Measures of Complexity from Theory to Applications 2011-10-01T23:07:46+00:00 http://chaos.aip.org/resource/1/chaoeh/v21/i3?&section=focus-issue-randomness-structure-and-causality-measures-of-complexity-from-theory-to-applications&page=1 cshalizicomplexity_measures to_read machta.jon ay.nihat jost.jurgen kith_and_kin krakauer.david crutchfield.james_p. in_NB feldman.david_p. https://pinboard.in/ https://pinboard.in/u:cshalizi/b:b30f7400b2b0/ [1108.3984] Process Dimension of Classical and Non-Commutative Processes 2011-08-22T14:08:23+00:00 http://arxiv.org/abs/1108.3984 cshalizi complexity_measures observable_operator_models ay.nihat kith_and_kin to_read re:AoS_project lohr.wolfgang predictive_states in_NB https://pinboard.in/u:cshalizi/b:bfb7dc2cdd00/ Phys. Rev. E 83, 041906 (2011): Neural complexity: A graph theoretic interpretation 2011-04-18T01:34:22+00:00 http://pre.aps.org/abstract/PRE/v83/i4/e041906 cshalizicomplexity_measures networks in_NB https://pinboard.in/u:cshalizi/b:a274ea9009d8/ What is a complex system? - PhilSci-Archive 2011-03-03T01:52:15+00:00 http://philsci-archive.pitt.edu/8496/ cshalizi complexity_measures complexity kith_and_kin have_read wiesner.karoline https://pinboard.in/u:cshalizi/b:aa2d09919e23/ [1011.5334] A Graph Theoretic Interpretation of Neural Complexity 2010-12-13T22:14:56+00:00 http://arxiv.org/abs/1011.5334 cshalizicomplexity_measures information_theory to_read color_me_skeptical https://pinboard.in/u:cshalizi/b:a76066b2350c/ [1012.1890] A measure of statistical complexity based on predictive information 2010-12-13T22:13:55+00:00 http://arxiv.org/abs/1012.1890 cshalizi complexity_measures to_read color_me_skeptical https://pinboard.in/u:cshalizi/b:b521fdcd47c9/ [0806.2552] Complexity Measures from Interaction Structures 2010-11-28T19:02:10+00:00 http://arxiv.org/abs/0806.2552 cshalizi complexity_measures information_theory information_geometry ay.nihat jost.jurgen https://pinboard.in/u:cshalizi/b:482c3097e866/ Information-Theoretic Methods for the Visual Analysis of Climate and Flow Data (Tutorial Slides) 2010-10-06T19:05:29+00:00 http://www.cs.utk.edu/~huangj/vis09/janicke_tutorial.pdf cshalizi visual_display_of_quantitative_information complexity_measures computational_mechanics janicke.heiki to:blog via:georg https://pinboard.in/u:cshalizi/b:4cb8ff268d67/ Phys. Rev. E 79, 026201 (2009): Complexity measures from interaction structures 2010-09-10T12:22:57+00:00 http://pre.aps.org/abstract/PRE/v79/i2/e026201 cshalizi complexity_measures information_theory kith_and_kin ay.nihat jost.jurgen to_read re:stacs https://pinboard.in/u:cshalizi/b:f04e5087c8ba/ Towards Automatic Feature-based Visualization 2010-08-29T20:23:34+00:00 http://cs.swan.ac.uk/~csheike/Data/dag07.pdf cshalizivisual_display_of_quantitative_information fluid_mechanics markov_models information_theory complexity_measures have_read https://pinboard.in/u:cshalizi/b:6b3484ff1852/ ScienceDirect - Computers & Graphics : Steady visualization of the dynamics in fluids using ε-machines 2010-08-29T20:20:54+00:00 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TYG-4WS2HX2-1&_user=10&_coverDate=10%2F31%2F2009&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_rerunOrigin=scholar.google&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=25a55951d410834ebc2d488c9bca496b&searchtype=a cshalizifluid_mechanics visual_display_of_quantitative_information markov_models re:stacs information_theory complexity_measures have_read https://pinboard.in/u:cshalizi/b:413f8cc06d62/ [0712.4216] Offdiagonal complexity: A computationally quick network complexity measure. Application to protein networks and cell division 2010-08-29T20:12:07+00:00 http://arxiv.org/abs/0712.4216 cshalizicomplexity_measures networks https://pinboard.in/u:cshalizi/b:9404dbef3a42/ Phys. Rev. E 82, 026117 (2010): Self-assembly, modularity, and physical complexity 2010-08-27T20:32:44+00:00 http://pre.aps.org/abstract/PRE/v82/i2/e026117 cshalizicomplexity_measures to_read self-organization https://pinboard.in/u:cshalizi/b:1fa70bb2b369/ [0911.3482] Complexity of Networks (reprise) 2010-08-26T16:50:30+00:00 http://arxiv.org/abs/0911.3482 cshalizicomplexity_measures networks https://pinboard.in/u:cshalizi/b:539ac4ec28a6/ [1007.1829] Topological reversibility and causality in feed-forward networks 2010-07-13T18:21:31+00:00 http://arxiv.org/abs/1007.1829 cshalizi complexity_measures irreversibility causality sole.ricard color_me_skeptical https://pinboard.in/u:cshalizi/b:50b9201c06d7/ [0902.1209] Time's Barbed Arrow: Irreversibility, Crypticity, and Stored Information 2010-05-31T00:50:57+00:00 http://arxiv.org/abs/0902.1209 cshalizicomplexity_measures to_read crutchfield.james_p. https://pinboard.in/u:cshalizi/b:3bbc76af1660/ [1003.3028] Quantifying Emergence in term of Persistent Mutual Information 2010-03-17T13:53:36+00:00 http://arxiv.org/abs/1003.3028 cshaliziemergence complexity_measures to_read https://pinboard.in/u:cshalizi/b:0bbd1a83c8d8/ [1001.2686] Effective complexity of stationary process realizations 2010-01-18T13:44:40+00:00 http://arxiv.org/abs/1001.2686 cshalizialgorithmic_information_theory complexity_measures kith_and_kin ay.nihat stochastic_processes in_NB https://pinboard.in/u:cshalizi/b:972274e7c9ea/ [0908.2248] Mapping from Architecture to Dynamics: A Unified View of Dynamical Processes on Networks 2009-08-26T20:45:36+00:00 http://arxiv.org/abs/0908.2248 cshalizinetworks dynamical_systems complexity_measures color_me_skeptical https://pinboard.in/u:cshalizi/b:63ea05ddd422/ [0908.3447] Recurrence networks - A novel paradigm for nonlinear time series analysis 2009-08-25T14:02:44+00:00 http://arxiv.org/abs/0908.3447 cshalizidynamical_systems recurrence_times networks complexity_measures time_series color_me_skeptical https://pinboard.in/u:cshalizi/b:d825903acb0a/ [0905.2918] Information erasure lurking behind measures of complexity 2009-05-19T16:13:25+00:00 http://arxiv.org/abs/0905.2918 cshalizi complexity_measures prediction information_theory https://pinboard.in/u:cshalizi/b:f8f8c527cc63/ Memory traces in dynamical systems — PNAS 2008-12-16T18:20:39+00:00 http://www.pnas.org/content/105/48/18970.abstract cshalizi memory dynamical_systems information_theory complexity_measures fisher_information to_teach:complexity-and-inference re:stacs in_NB https://pinboard.in/u:cshalizi/b:3d4cfe141027/ [0812.1949] Prediction with Restricted Resources and Finite Automata 2008-12-12T02:46:34+00:00 http://arxiv.org/abs/0812.1949 cshalizi prediction automata_theory complexity_measures to_read color_me_skeptical https://pinboard.in/u:cshalizi/b:92a34f0ee35a/