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	<rdf:li rdf:resource="http://blog.jqtouch.com/post/205113875/milliseconds-responsiveness-and-the-fast-tap"/>
	<rdf:li rdf:resource="http://www.essepuntato.it/lode"/>
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	<rdf:li rdf:resource="http://www.coin-or.org/"/>
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    <dc:date>2020-07-14T19:48:17+00:00</dc:date>
    <link>https://github.com/spiermar/burn</link>
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    <dc:date>2020-01-19T09:36:34+00:00</dc:date>
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    <dc:creator>arthegall</dc:creator><description><![CDATA[Yes! ]]></description>
<dc:subject>charts diagrams markdown tool javascript dagre</dc:subject>
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    <dc:creator>arthegall</dc:creator><dc:subject>aws tool iam security automation</dc:subject>
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    <title>jrnl- The Command Line Journal</title>
    <dc:date>2016-11-30T18:45:39+00:00</dc:date>
    <link>http://jrnl.sh/index.html</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Been using this to keep notes and journals for the last few weeks, works well.]]></description>
<dc:subject>journal writing personal tool software</dc:subject>
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    <link>http://www.softwareishard.com/har/viewer/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>har web programming debugging tool</dc:subject>
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    <dc:date>2016-04-11T13:53:04+00:00</dc:date>
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    <dc:creator>arthegall</dc:creator><dc:subject>scraping web tool node javascript open-source</dc:subject>
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    <link>http://mash.readthedocs.org/en/latest/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["Fast genome and metagenome distance estimation using MinHash"]]></description>
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<item rdf:about="https://www.iterm2.com/downloads.html">
    <title>Downloads - iTerm2 - Mac OS Terminal Replacement</title>
    <dc:date>2015-10-09T18:52:41+00:00</dc:date>
    <link>https://www.iterm2.com/downloads.html</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Possible replacement for TotalTerminal (which I love, but is no longer under active development, says its webpage)]]></description>
<dc:subject>terminal mac os-x tool software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
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<item rdf:about="http://www.minizinc.org/">
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    <link>http://www.minizinc.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Constraint problem compiler.]]></description>
<dc:subject>compiler tool via:aphyr optimization csp</dc:subject>
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    <link>http://snpeff.sourceforge.net/SnpSift.html</link>
    <dc:creator>arthegall</dc:creator><dc:subject>variant annotation genomics tool tutorial software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
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    <link>https://www.packer.io/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Exactly what I'd been looking for.]]></description>
<dc:subject>via:earl virtualization virtual-box tool software devops</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
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<item rdf:about="http://www.gnu.org/software/datamash/examples/">
    <title>datamash - gnu project - free software foundation</title>
    <dc:date>2014-07-29T10:08:46+00:00</dc:date>
    <link>http://www.gnu.org/software/datamash/examples/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>data-processing via:chl gnu open-source cli tool</dc:subject>
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<item rdf:about="https://github.com/aphyr/timelike">
    <title>aphyr/timelike</title>
    <dc:date>2014-05-08T01:25:58+00:00</dc:date>
    <link>https://github.com/aphyr/timelike</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Library (clojure) for simulating parallel systems.]]></description>
<dc:subject>aphyr via:carlyeks simulation software tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:1888750ec0ae/</dc:identifier>
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<item rdf:about="http://www.sysdig.org/">
    <title>sysdig | Home</title>
    <dc:date>2014-04-04T10:48:06+00:00</dc:date>
    <link>http://www.sysdig.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Oh, god, does this mean I'm going to have to learn Lua? ]]></description>
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<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:bfd92a2d1a50/</dc:identifier>
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<item rdf:about="https://github.com/tdanford/chrome-cli">
    <title>tdanford/chrome-cli</title>
    <dc:date>2014-02-11T14:46:16+00:00</dc:date>
    <link>https://github.com/tdanford/chrome-cli</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[A command-line tool for interacting with tabs in Chrome.  The original repo was targeting 10.9, but I have 10.8, so I've added some code in my own repo to target 10.8 -- seems to work fine.

I also added the ability to output all your tab information (include page title, tab ID, and URL) as a TSV using a new 'info tabs' option.  This should make it easier to grep through your hundreds of open tabs.]]></description>
<dc:subject>chrome cli tool software via:chl github</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:704108953bfb/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:chl"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
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</item>
<item rdf:about="http://typesafe.com/blog/zinc-and-incremental-compilation">
    <title>Zinc and Incremental Compilation – Blog - Typesafe</title>
    <dc:date>2013-12-09T17:29:04+00:00</dc:date>
    <link>http://typesafe.com/blog/zinc-and-incremental-compilation</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Need to set this up, at some point.]]></description>
<dc:subject>procrastination tool programming scala compiler work</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:9a1ddacc73b9/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:procrastination"/>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:scala"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:compiler"/>
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</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://gatling-tool.org/">
    <title>Gatling Project - Stress Tool</title>
    <dc:date>2013-12-06T10:54:43+00:00</dc:date>
    <link>http://gatling-tool.org/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>stress-testing web tool software testing performance</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:2a2da68e4bf8/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:testing"/>
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</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://fluentd.org/">
    <title>Fluentd: Open Source Log Management</title>
    <dc:date>2013-11-15T09:41:31+00:00</dc:date>
    <link>http://fluentd.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Yet another open-source log collector. ]]></description>
<dc:subject>logging json data work software tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:8250aa6db1d5/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:data"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:work"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.broadinstitute.org/cancer/cga/hapseg">
    <title>HAPSEG | www.broadinstitute.org/cancer/CGA</title>
    <dc:date>2013-11-15T09:03:26+00:00</dc:date>
    <link>http://www.broadinstitute.org/cancer/cga/hapseg</link>
    <dc:creator>arthegall</dc:creator><dc:subject>hapseg tool cancer cga genomics work broad-institute</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:17ad70cc95f8/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:cancer"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:cga"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:work"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:broad-institute"/>
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</item>
<item rdf:about="http://ace.c9.io/#nav=about">
    <title>Ace - The High Performance Code Editor for the Web</title>
    <dc:date>2013-11-06T19:59:23+00:00</dc:date>
    <link>http://ace.c9.io/#nav=about</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Someone will combine Ace  & Google Drive Realtime API  into the ultimate pair-programming app.]]></description>
<dc:subject>via:chl editor javascript programming web tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:2e9f96cef849/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:javascript"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
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</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://funseq.gersteinlab.org/">
    <title>funseq</title>
    <dc:date>2013-11-06T10:11:41+00:00</dc:date>
    <link>http://funseq.gersteinlab.org/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>mark-gerstein functional-genomics annotation variants sequence-analysis software tool work</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:88439ef35b5d/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:functional-genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:annotation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:variants"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:sequence-analysis"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
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</item>
<item rdf:about="https://github.com/attractivechaos/klib">
    <title>attractivechaos/klib</title>
    <dc:date>2013-10-27T02:17:48+00:00</dc:date>
    <link>https://github.com/attractivechaos/klib</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Used in bwa.]]></description>
<dc:subject>bioinformatics library open-source software tool c programming</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:d18cdca18f2b/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:c"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://www.sanger.ac.uk/resources/databases/exomiser/">
    <title>The Exomiser: annotate and filter variants - Wellcome Trust Sanger Institute</title>
    <dc:date>2013-10-24T01:37:42+00:00</dc:date>
    <link>https://www.sanger.ac.uk/resources/databases/exomiser/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>work variant-annotation wellcome-trust tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:49d2d89a1797/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:wellcome-trust"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.methods.co.nz/asciidoc/">
    <title>AsciiDoc Home Page</title>
    <dc:date>2013-09-06T09:41:34+00:00</dc:date>
    <link>http://www.methods.co.nz/asciidoc/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>slideshows tool markup generator e-books via:chl</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:c2c01342aecc/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:slideshows"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:markup"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:generator"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:e-books"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:chl"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://stedolan.github.io/jq/">
    <title>jq</title>
    <dc:date>2013-06-28T15:02:44+00:00</dc:date>
    <link>http://stedolan.github.io/jq/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[json-processing from the command-line.]]></description>
<dc:subject>json tool utility saving</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:21bd00b8769f/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:json"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:utility"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:saving"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://bramp.github.io/js-sequence-diagrams/">
    <title>js-sequence-diagrams by bramp</title>
    <dc:date>2013-04-29T14:40:18+00:00</dc:date>
    <link>http://bramp.github.io/js-sequence-diagrams/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[]]></description>
<dc:subject>diagram web tool javascript visualization via:?</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:97f18daa39ef/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:diagram"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:javascript"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:?"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://people.apache.org/~isabel/site/taste.html">
    <title>Apache Mahout - Taste Documentation</title>
    <dc:date>2013-04-28T11:20:46+00:00</dc:date>
    <link>http://people.apache.org/~isabel/site/taste.html</link>
    <dc:creator>arthegall</dc:creator><dc:subject>apache collaborative-filtering tool machinelearning mahout</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:f9b8e0fede41/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:apache"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:collaborative-filtering"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:machinelearning"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mahout"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://blog.mozilla.org/labs/2013/04/introducing-towtruck/">
    <title>Introducing TowTruck: A Collaboration Service For Every Website | Mozilla Labs</title>
    <dc:date>2013-04-28T11:18:29+00:00</dc:date>
    <link>https://blog.mozilla.org/labs/2013/04/introducing-towtruck/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>mozilla collaboration tool web</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:eadf674eaf73/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mozilla"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:collaboration"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
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</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.sensefulsolutions.com/2010/10/format-text-as-table.html">
    <title>Senseful Solutions: Format Text as a Table</title>
    <dc:date>2013-04-12T12:29:38+00:00</dc:date>
    <link>http://www.sensefulsolutions.com/2010/10/format-text-as-table.html</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Very cool.]]></description>
<dc:subject>text formatting tables visualization tool web</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:0c6be222a806/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:text"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:formatting"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tables"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.pixelglow.com/graphviz/">
    <title>pixelglow | graphviz</title>
    <dc:date>2013-04-11T12:24:21+00:00</dc:date>
    <link>http://www.pixelglow.com/graphviz/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Mac port of graphviz.]]></description>
<dc:subject>graphviz graphs visualization tool software mac</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:59a0dddb4707/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:graphviz"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:graphs"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mac"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.secdev.org/projects/scapy/">
    <title>Scapy</title>
    <dc:date>2013-04-11T12:06:34+00:00</dc:date>
    <link>http://www.secdev.org/projects/scapy/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>networking python security command-line tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:b96c762917b5/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:networking"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:python"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:security"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:command-line"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://phabricator.org/">
    <title>Phabricator</title>
    <dc:date>2013-04-09T17:25:25+00:00</dc:date>
    <link>http://phabricator.org/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>code-review tool software web php development</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:916320d9c193/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:code-review"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:php"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:development"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://nytimes.github.com/svg-crowbar/">
    <title>SVG Crowbar</title>
    <dc:date>2013-03-30T11:28:46+00:00</dc:date>
    <link>http://nytimes.github.com/svg-crowbar/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["A bookmarklet that extracts SVG nodes and accompanying styles from an HTML document and downloads them as an SVG file." ]]></description>
<dc:subject>svg d3 visualization bookmarklet tool via:twitter via:nytimes</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:cc82afc346b4/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:svg"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:d3"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bookmarklet"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:twitter"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:nytimes"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://mutationassessor.org/">
    <title>MutationAssessor.org /// functional impact of protein mutations</title>
    <dc:date>2013-02-22T12:37:56+00:00</dc:date>
    <link>http://mutationassessor.org/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>variant-annotation genomics sequence-analysis web tool software functional-genomics</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:288d44974425/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:variant-annotation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:sequence-analysis"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:functional-genomics"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://www.varnish-cache.org/">
    <title>Varnish Cache</title>
    <dc:date>2012-12-21T20:12:37+00:00</dc:date>
    <link>https://www.varnish-cache.org/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>caching web tool performance proxy</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:c1263c19d2a6/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:caching"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:performance"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:proxy"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.biomedcentral.com/1471-2105/13/297/abstract">
    <title>BMC Bioinformatics | Abstract | Oculus: faster sequence alignment by streaming read compression</title>
    <dc:date>2012-12-07T11:07:51+00:00</dc:date>
    <link>http://www.biomedcentral.com/1471-2105/13/297/abstract</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[AFAICT, simply detects duplicate reads and returns the pre-computed alignments for them, as a wrapper... right? ]]></description>
<dc:subject>sequence-analysis research-article software tool alignment compression</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:a0ca04ce7baf/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:research-article"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:alignment"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:compression"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://mc-stan.org/index.html">
    <title>Stan: Project Home</title>
    <dc:date>2012-12-06T11:08:55+00:00</dc:date>
    <link>http://mc-stan.org/index.html</link>
    <dc:creator>arthegall</dc:creator><dc:subject>mcmc R c++ tool software library bayesian-methods no-u-turn-sampler bugs</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:3b4f7a544f3c/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:R"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:c++"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bayesian-methods"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:no-u-turn-sampler"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bugs"/>
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</item>
<item rdf:about="http://www.novocraft.com/main/index.php">
    <title>Novocraft.com: Novocraft</title>
    <dc:date>2012-12-04T09:59:00+00:00</dc:date>
    <link>http://www.novocraft.com/main/index.php</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Proprietary (!) alignment algorithm, with a big quote from Heng Li slapped on the front of the website.]]></description>
<dc:subject>novoalign business bioinformatics alignment tool software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:68e32eb0fbd0/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:novoalign"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:business"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:alignment"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
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</item>
<item rdf:about="http://xiki.org/">
    <title>Xiki</title>
    <dc:date>2012-12-03T13:42:44+00:00</dc:date>
    <link>http://xiki.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[I'm not going to lie to you, that screencast is remarkably compelling, in a kind of "welcome to the mind of an insane wizard-programmer super-user on acid" kind of way.  ]]></description>
<dc:subject>via:vaguery shell wiki tool software gui command-line interesting</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:5c5e37dc9471/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:vaguery"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:shell"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:wiki"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:gui"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:command-line"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:interesting"/>
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</item>
<item rdf:about="http://www.eclipse.org/aether/">
    <title>Aether</title>
    <dc:date>2012-12-01T17:46:37+00:00</dc:date>
    <link>http://www.eclipse.org/aether/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[A library for interacting with Maven repos, originally from Sonatype, now part of the Eclipse project.]]></description>
<dc:subject>java library maven api software programming tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:69ff9f3e00cb/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:java"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:maven"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:api"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
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</item>
<item rdf:about="http://mitmproxy.org/">
    <title>mitmproxy - home</title>
    <dc:date>2012-11-10T10:50:06+00:00</dc:date>
    <link>http://mitmproxy.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["an SSL-capable man-in-the-middle proxy." ]]></description>
<dc:subject>software proxy mitm security ssl http tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:b8872a836fe4/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:proxy"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mitm"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:security"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:ssl"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:http"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://useq.sourceforge.net/applications.html">
    <title>USeq Applications</title>
    <dc:date>2012-07-15T12:19:13+00:00</dc:date>
    <link>http://useq.sourceforge.net/applications.html</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["MakeTranscriptome" includes a description of a method for generating catalogs of exon-junction sequences.  ]]></description>
<dc:subject>spliceforms exon-junctions work tool software bioinformatics genomics eland</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:755e120a3151/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:exon-junctions"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:work"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:eland"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://gunicorn.org/">
    <title>Green Unicorn - Welcome</title>
    <dc:date>2012-06-29T14:28:01+00:00</dc:date>
    <link>http://gunicorn.org/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>web-server web tool software python wsgi django</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:8f32e71f9d70/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web-server"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:python"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:wsgi"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:django"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://inductionapp.com/">
    <title>Induction ⚡ A Polyglot Database Client For Mac OS X</title>
    <dc:date>2012-06-23T10:33:07+00:00</dc:date>
    <link>http://inductionapp.com/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>database visualization os-x tool mysql</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:1e30c921e776/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:database"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:os-x"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mysql"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://samtools.sourceforge.net/tabix.shtml">
    <title>tabix.1</title>
    <dc:date>2012-06-04T13:08:33+00:00</dc:date>
    <link>http://samtools.sourceforge.net/tabix.shtml</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Broad tool.  Compressing tab-delimited files of genomic locations for fast(er) indexing from the file system.  Don't know whether I should be horrified or not. ]]></description>
<dc:subject>data database compression indexing genomics broad tool zomg</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:c4ddd643bf36/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:data"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:database"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:compression"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:indexing"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:broad"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:zomg"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://blog.jqtouch.com/post/205113875/milliseconds-responsiveness-and-the-fast-tap">
    <title>The jQTouch Blog</title>
    <dc:date>2012-05-20T16:52:18+00:00</dc:date>
    <link>http://blog.jqtouch.com/post/205113875/milliseconds-responsiveness-and-the-fast-tap</link>
    <dc:creator>arthegall</dc:creator><dc:subject>mobile iphone webkit programming tool javascript</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:2ccb365230cf/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mobile"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:iphone"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:webkit"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:javascript"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.essepuntato.it/lode">
    <title>LODE - Live OWL Documentation Environment</title>
    <dc:date>2012-05-15T15:30:26+00:00</dc:date>
    <link>http://www.essepuntato.it/lode</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Better tools for better ontologies.]]></description>
<dc:subject>owl semanticweb documentation tool obo via:allan-ruttenberg</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:c92d15339e90/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:owl"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:semanticweb"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:documentation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:obo"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:allan-ruttenberg"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://mirrors.ecvps.com/gnu/tar/">
    <title>Index of /gnu/tar/</title>
    <dc:date>2012-02-23T15:25:40+00:00</dc:date>
    <link>http://mirrors.ecvps.com/gnu/tar/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[For installing socket.io with npm on some ... old systems.]]></description>
<dc:subject>socket.io npm node gnu tar installation linux weird software programming tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:6958f217fd62/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:socket.io"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:npm"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:node"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:gnu"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tar"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:installation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:linux"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:weird"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/openplanets/fido">
    <title>openplanets/fido - GitHub</title>
    <dc:date>2012-02-09T13:19:40+00:00</dc:date>
    <link>https://github.com/openplanets/fido</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[The CTO of Ingenuity asked me last week, if there was something like this tool but for bioinformatics file formats.  No... but there probably could be.  There definitely *should* be.]]></description>
<dc:subject>work ingenuity bioinformatics file-format tool software github</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:8621d5bf419c/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:work"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:ingenuity"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:file-format"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.ensembl.org/Homo_sapiens/UserData/UploadVariations">
    <title>Ensembl genome browser 65: Homo sapiens - Variant Effect Predictor - Custom Data</title>
    <dc:date>2012-02-06T14:58:50+00:00</dc:date>
    <link>http://www.ensembl.org/Homo_sapiens/UserData/UploadVariations</link>
    <dc:creator>arthegall</dc:creator><dc:subject>ensembl ebi variants genetics bioinformatics web tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:37ae265b6508/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:ensembl"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:ebi"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:variants"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genetics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.dagitty.net/">
    <title>DAGitty v1.0</title>
    <dc:date>2011-10-26T13:43:02+00:00</dc:date>
    <link>http://www.dagitty.net/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["A graphical tool for analyzing causal diagrams."]]></description>
<dc:subject>graphical-models causality software tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:6bf181e3dc79/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:graphical-models"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:causality"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://code.google.com/p/formulatepro/">
    <title>formulatepro - Overlay text and graphics on PDF documents. Great for filling out forms. - Google Project Hosting</title>
    <dc:date>2011-09-13T20:02:29+00:00</dc:date>
    <link>http://code.google.com/p/formulatepro/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>via:mreid open-source pdf oxs software tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:8a5e908eef87/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:mreid"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:pdf"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:oxs"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://vagrantup.com/">
    <title>Vagrant - Welcome</title>
    <dc:date>2011-08-05T14:17:16+00:00</dc:date>
    <link>http://vagrantup.com/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Command-line easy-interface tools for creating virtual machine images, on top of VirtualBox.]]></description>
<dc:subject>virtual-machine software tool virtualization deployment</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:9c1d2d5ed03b/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:virtual-machine"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:virtualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:deployment"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://flexiejs.com/playground/">
    <title>Flexie | Flexbox Playground</title>
    <dc:date>2011-06-15T10:59:11+00:00</dc:date>
    <link>http://flexiejs.com/playground/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>via:arsyed layout web css design tool</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:bca1081e609b/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:arsyed"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:layout"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:css"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:design"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.asciiflow.com/">
    <title>Asciiflow - ASCII Flow Diagram Tool</title>
    <dc:date>2011-06-14T20:33:39+00:00</dc:date>
    <link>http://www.asciiflow.com/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>via:chl ascii-art awesome web diagram tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:dee0147db5e3/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:chl"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:ascii-art"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:awesome"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:diagram"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://prezi.com/">
    <title>Prezi - The Zooming Presentation Editor</title>
    <dc:date>2011-05-12T11:50:57+00:00</dc:date>
    <link>http://prezi.com/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>powerpoint presentation web tool visualization work</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:58dcbda2307f/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:powerpoint"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:presentation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:work"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://colorbrewer2.org/">
    <title>Colorbrewer: Color Advice for Maps</title>
    <dc:date>2011-04-11T15:03:24+00:00</dc:date>
    <link>http://colorbrewer2.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Color picker for cartographers -- need to think about this for other kinds of data.]]></description>
<dc:subject>cartography color visualization picker tool web</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:b0b04751187e/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:cartography"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:color"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:picker"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://owl.cs.manchester.ac.uk/modularity/">
    <title>OWL Module Extractor</title>
    <dc:date>2011-04-11T14:55:10+00:00</dc:date>
    <link>http://owl.cs.manchester.ac.uk/modularity/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[I wonder how close this is to an API for assigning (nonce) URLs to OWL expressions?]]></description>
<dc:subject>work ontologies owl semanticweb tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:3a2e177976f0/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:work"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:ontologies"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:owl"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:semanticweb"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://qiime.sourceforge.net/">
    <title>QIIME: Quantitative Insights Into Microbial Ecology — Homepage</title>
    <dc:date>2011-03-31T18:33:10+00:00</dc:date>
    <link>http://qiime.sourceforge.net/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Microbial ecology and biology through deep-sequencing toolkit]]></description>
<dc:subject>tool bioinformatics software microbes ecology genomics</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:3da369e89ed8/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:microbes"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:ecology"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://eclim.org/">
    <title>Welcome to Eclim - eclim (eclipse + vim)</title>
    <dc:date>2011-01-28T20:51:15+00:00</dc:date>
    <link>http://eclim.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Calling a headless Eclipse from vim? Whoa.]]></description>
<dc:subject>eclipse vim programming tutorial software tool java</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:ab50e26f905b/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:eclipse"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:vim"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tutorial"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:java"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.coin-or.org/">
    <title>COIN-OR</title>
    <dc:date>2011-01-26T12:10:27+00:00</dc:date>
    <link>http://www.coin-or.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Open source "industrial strength" linear and integer programming.]]></description>
<dc:subject>linear-programming integer-programming software tool opensource</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:ed2d15384c84/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:linear-programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:integer-programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:opensource"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://paperpile.com/">
    <title>Paperpile</title>
    <dc:date>2011-01-25T18:45:08+00:00</dc:date>
    <link>http://paperpile.com/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Open source paper management software, written for Linux and OS X, by Bob's officemate.  The beta looks *great*.  Right now I'm importing the reference info for the huge pile of PDFs I've got sitting on my hard drive...]]></description>
<dc:subject>references citations bibtex software tool awesome via:raltshuler</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:3f0961b9a8ac/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:references"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:citations"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bibtex"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:awesome"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:raltshuler"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://blog.okfn.org/2010/11/12/open-source-annotation-toolkit-for-inline-online-web-annotation/">
    <title>Open Knowledge Foundation Blog » Blog Archive » Open-Source Annotation Toolkit for Inline, Online Web Annotation</title>
    <dc:date>2010-12-22T23:54:32+00:00</dc:date>
    <link>http://blog.okfn.org/2010/11/12/open-source-annotation-toolkit-for-inline-online-web-annotation/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>annotation web tool software open-knowledge</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:b85b4fde3d42/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:annotation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-knowledge"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://interactive-biosoftware.com/">
    <title>Interactive Biosoftware - Practical software for bioscientists</title>
    <dc:date>2010-12-17T13:53:53+00:00</dc:date>
    <link>http://interactive-biosoftware.com/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[This looks kinda bespoke (have I mentioned how 'bespoke' is my new favorite word?) and ad hoc, but ... mentioned during the Clinical Bioinformatics Seminar two weeks ago.]]></description>
<dc:subject>bioinformatics software tool mutations genetics variation genomics</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:11bd54f7afd9/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mutations"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genetics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:variation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://larve.net/people/hugo/2003/scratchpad/NotationThreeEmacsMode.html">
    <title>An Emacs major mode for Notation 3: n3-mode</title>
    <dc:date>2010-11-19T19:30:11+00:00</dc:date>
    <link>http://larve.net/people/hugo/2003/scratchpad/NotationThreeEmacsMode.html</link>
    <dc:creator>arthegall</dc:creator><dc:subject>n3 rdf semanticweb emacs tool software editing major-mode</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:f615b10fa7aa/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:n3"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:rdf"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:semanticweb"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:emacs"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:editing"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:major-mode"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://2010.igem.org/Team:LMU-Munich/ProSearch">
    <title>Team:LMU-Munich/ProSearch - 2010.igem.org</title>
    <dc:date>2010-11-07T19:57:57+00:00</dc:date>
    <link>http://2010.igem.org/Team:LMU-Munich/ProSearch</link>
    <dc:creator>arthegall</dc:creator><dc:subject>igem igem2010 amateur-bioinformatics tool software web regulatory-networks</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:b0c1b8624375/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:igem"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:igem2010"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:amateur-bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:regulatory-networks"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://kappalanguage.org/">
    <title>The Kappa Language</title>
    <dc:date>2010-11-07T15:09:08+00:00</dc:date>
    <link>http://kappalanguage.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["A rule-based language for modeling protein interaction networks" -- used by the Edinburgh iGem team, modeling light-sensitive bacteria.
]]></description>
<dc:subject>modeling-language protein-interactions language stochastic-grammar software tool biology synthetic-biology</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:d7bdceaed311/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:modeling-language"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:protein-interactions"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:language"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:stochastic-grammar"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:biology"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:synthetic-biology"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://code.google.com/p/maatkit/">
    <title>maatkit - Project Hosting on Google Code</title>
    <dc:date>2010-11-07T14:31:10+00:00</dc:date>
    <link>http://code.google.com/p/maatkit/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>tool database mysql postgresql google-code utilities</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:e3effb47dbaa/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:database"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mysql"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:postgresql"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:google-code"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:utilities"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://weblog.clarkparsia.com/2010/05/07/rdf-for-fun-and-profit-using-empire/">
    <title>RDF for Fun and Profit: Using Empire—Clark &amp; Parsia: Thinking Clearly</title>
    <dc:date>2010-10-20T15:25:26+00:00</dc:date>
    <link>http://weblog.clarkparsia.com/2010/05/07/rdf-for-fun-and-profit-using-empire/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>empire clark-and-parsia java tool rdf semanticweb software tutorial jpa</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:505c19385195/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:empire"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:clark-and-parsia"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:java"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:rdf"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:semanticweb"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tutorial"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:jpa"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://mvnrepository.com/">
    <title>Maven Repository: Search/Browse/Explore</title>
    <dc:date>2010-09-21T12:47:35+00:00</dc:date>
    <link>http://mvnrepository.com/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Maven 2 repository, "used by default by Apache Ivy."
]]></description>
<dc:subject>ivy apache software dependencies tool repository programming</dc:subject>
<dc:identifier>https://pinboard.in/u:arthegall/b:919a97f78ccb/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:ivy"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:apache"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:dependencies"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:repository"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
</rdf:Bag></taxo:topics>
</item>
</rdf:RDF>