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</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://helen.blog/2020/07/what-software-teams-can-learn-from-music-masterclasses/">
    <title>What software teams can learn from music masterclasses - Helen Hou-Sandí</title>
    <dc:date>2020-09-09T13:43:39+00:00</dc:date>
    <link>https://helen.blog/2020/07/what-software-teams-can-learn-from-music-masterclasses/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[I keep having to search the slack for previous references to this]]></description>
<dc:subject>masterclass music teaching programming software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:7ddd086c2aba/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:masterclass"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:music"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:teaching"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/privacytrustlab/ml_privacy_meter">
    <title>privacytrustlab/ml_privacy_meter: Machine Learning Privacy Meter: A tool to quantify the privacy risks of machine learning models with respect to inference attacks</title>
    <dc:date>2020-08-01T09:54:26+00:00</dc:date>
    <link>https://github.com/privacytrustlab/ml_privacy_meter</link>
    <dc:creator>arthegall</dc:creator><dc:subject>privacy differential-privacy software github machinelearning</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:7a0a6b276cf3/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:privacy"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:differential-privacy"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:machinelearning"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/spiermar/burn">
    <title>spiermar/burn: burn is a CLI tool to convert performance profiles to hierarchical data structures that can be visualized as flame graphs</title>
    <dc:date>2020-07-14T19:48:17+00:00</dc:date>
    <link>https://github.com/spiermar/burn</link>
    <dc:creator>arthegall</dc:creator><dc:subject>flame-graphs cli github tool software performance visualization</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:b1fddebe3f8f/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:flame-graphs"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:cli"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:performance"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://apenwarr.ca/log/20171213">
    <title>An epic treatise on scheduling, bug tracking, and triage - apenwarr</title>
    <dc:date>2020-07-14T19:47:11+00:00</dc:date>
    <link>https://apenwarr.ca/log/20171213</link>
    <dc:creator>arthegall</dc:creator><dc:subject>programming management agile software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:3f20a4408de8/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:management"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:agile"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://diplomacy.readthedocs.io/en/stable/index.html">
    <title>Welcome to Diplomacy package! — diplomacy 1.1.2 documentation</title>
    <dc:date>2020-07-14T14:41:08+00:00</dc:date>
    <link>https://diplomacy.readthedocs.io/en/stable/index.html</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Diplomacy adjudicator in Python]]></description>
<dc:subject>diplomacy games python software open-source</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:992dca63353d/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:diplomacy"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:games"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:python"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/TimelyDataflow/timely-dataflow">
    <title>TimelyDataflow/timely-dataflow: A modular implementation of timely dataflow in Rust</title>
    <dc:date>2020-02-20T11:40:39+00:00</dc:date>
    <link>https://github.com/TimelyDataflow/timely-dataflow</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[the naiad paper implemented in Rust, and apparently the core of materialize.io (Frank McSherry's new thing?) ]]></description>
<dc:subject>frank-mcsherry rust naiad dataflow software github streaming</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:8df6582cb33e/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:frank-mcsherry"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:rust"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:naiad"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:dataflow"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:streaming"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://idyll-lang.org/">
    <title>Idyll | A markup language for interactive and data-driven blogging.</title>
    <dc:date>2020-02-06T13:29:20+00:00</dc:date>
    <link>https://idyll-lang.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[A more up-to-date replacement for TangleJS? ]]></description>
<dc:subject>tangle idyll language markdown visualization interactive-documents web software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:8446b7ede431/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tangle"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:idyll"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:language"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:markdown"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:interactive-documents"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:web"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://www.notion.so/How-to-do-Code-Reviews-1c33cbf7597a4d61aeb3905b86844baf">
    <title>&quot;How to do Code Reviews&quot;</title>
    <dc:date>2020-01-24T16:38:02+00:00</dc:date>
    <link>https://www.notion.so/How-to-do-Code-Reviews-1c33cbf7597a4d61aeb3905b86844baf</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Really nice summary of some good guidelines, for code reviews inside a private code-base.]]></description>
<dc:subject>coding software standards code-review list</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:df4d58f11f61/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:coding"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:standards"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:code-review"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:list"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://forsetisecurity.org/">
    <title>Forseti Security</title>
    <dc:date>2019-11-04T17:42:17+00:00</dc:date>
    <link>https://forsetisecurity.org/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>security google-cloud software tools</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:3b7f59d56093/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:security"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:google-cloud"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tools"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/rflamary/POT">
    <title>rflamary/POT: Python Optimal Transport library</title>
    <dc:date>2019-10-29T09:17:14+00:00</dc:date>
    <link>https://github.com/rflamary/POT</link>
    <dc:creator>arthegall</dc:creator><dc:subject>python library software github optimal-transport machinelearning</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:196aef0ae130/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:python"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:optimal-transport"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:machinelearning"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/jakubroztocil/rrule">
    <title>jakubroztocil/rrule: JavaScript library for working with recurrence rules for calendar dates as defined in the iCalendar RFC and more.</title>
    <dc:date>2019-10-09T12:14:19+00:00</dc:date>
    <link>https://github.com/jakubroztocil/rrule</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[recurrence rules (date manipulation) in Javascript]]></description>
<dc:subject>javascript software library dates calendar events</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:51e026df3900/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:javascript"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:dates"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:calendar"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:events"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/google/differential-privacy">
    <title>google/differential-privacy</title>
    <dc:date>2019-09-06T09:22:09+00:00</dc:date>
    <link>https://github.com/google/differential-privacy</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["This project contains a C++ library of ε-differentially private algorithms, which can be used to produce aggregate statistics over numeric data sets containing private or sensitive information. In addition, we provide a stochastic tester to check the correctness of the algorithms."]]></description>
<dc:subject>google software differential-privacy c++ library</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:39f827ba37d6/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:google"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:differential-privacy"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:c++"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/pierreablin/autoptim">
    <title>pierreablin/autoptim: Automatic differentiation + optimization</title>
    <dc:date>2019-02-19T11:18:34+00:00</dc:date>
    <link>https://github.com/pierreablin/autoptim</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[I'm a little confused -- weren't people *always* writing packages like this?  (PyTorch + ADiff) ]]></description>
<dc:subject>automatic-differentiation pytorch python software optimization</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:5361aeac79bc/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:automatic-differentiation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:pytorch"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:python"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:optimization"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://www.nature.com/articles/s41588-018-0316-4#code-availability">
    <title>Fast and accurate genomic analyses using genome graphs | Nature Genetics</title>
    <dc:date>2019-02-04T12:45:29+00:00</dc:date>
    <link>https://www.nature.com/articles/s41588-018-0316-4#code-availability</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Seven Bridges Genomics' graph genome processing pipeline, published in Nature Genetics.

"Graph Genome Pipeline is freely available to academic users for non-commercial use. Compiled standalone tools and the License of Use can be accessed at https://www.sevenbridges.com/graph-genome-academic-release/. The source code of the Graph Genome Pipeline tools is not publicly available."  

What utter bullshit.]]></description>
<dc:subject>genomics licensing seven-bridges graph-genomes software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:e3c8a69babd3/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:licensing"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:seven-bridges"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:graph-genomes"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://almond-sh.github.io/almond/stable/docs/intro">
    <title>Intro · almond</title>
    <dc:date>2018-12-21T16:36:48+00:00</dc:date>
    <link>http://almond-sh.github.io/almond/stable/docs/intro</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["almonst is a Scala kernel for jupyter" thinking about exploring a little bit about how to write kernels for jupyter]]></description>
<dc:subject>kernel jupyter scala software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:0f4d67e416bf/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:kernel"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:jupyter"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:scala"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/kaptoxic/alloy/blob/master/src/edu/mit/csail/sdg/alloy4whole/ExampleUsingTheAPI.java">
    <title>alloy/ExampleUsingTheAPI.java at master · kaptoxic/alloy</title>
    <dc:date>2017-06-13T11:48:14+00:00</dc:date>
    <link>https://github.com/kaptoxic/alloy/blob/master/src/edu/mit/csail/sdg/alloy4whole/ExampleUsingTheAPI.java</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Examples of using an API to the Alloy software (!) for model checking]]></description>
<dc:subject>alloy example software static-analysis programminglanguages</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:76fb263bd26e/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:alloy"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:example"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:static-analysis"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:programminglanguages"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://argus-sec.com/monitoring-spark-prometheus/">
    <title>Monitoring Apache Spark (Streaming) with Prometheus - Argus Cyber Security</title>
    <dc:date>2017-04-12T10:42:33+00:00</dc:date>
    <link>https://argus-sec.com/monitoring-spark-prometheus/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[JMX + Spark]]></description>
<dc:subject>jmx spark work tutorial configuration software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:f4590eb5b21e/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:jmx"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:spark"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:work"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tutorial"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:configuration"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/hammerlab/pileup.js">
    <title>hammerlab/pileup.js: Interactive in-browser track viewer</title>
    <dc:date>2016-11-30T18:48:05+00:00</dc:date>
    <link>https://github.com/hammerlab/pileup.js</link>
    <dc:creator>arthegall</dc:creator><dc:subject>hammerlab bioinformatics genomics visualization software opensource github</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:e220abd80e71/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:hammerlab"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:visualization"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:opensource"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://jrnl.sh/index.html">
    <title>jrnl- The Command Line Journal</title>
    <dc:date>2016-11-30T18:45:39+00:00</dc:date>
    <link>http://jrnl.sh/index.html</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Been using this to keep notes and journals for the last few weeks, works well.]]></description>
<dc:subject>journal writing personal tool software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:ee90b6cfbac4/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:journal"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:writing"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:personal"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://edwardlib.org/">
    <title>Edward – Home</title>
    <dc:date>2016-11-30T18:45:13+00:00</dc:date>
    <link>http://edwardlib.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["A library for probabilistic modeling, inference, and criticism." ]]></description>
<dc:subject>david-blei probabilistic-programming probabilistic-methods library software python neural-networks bayesian-methods</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:6cff2fe98783/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:probabilistic-programming"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:probabilistic-methods"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:python"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:neural-networks"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bayesian-methods"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://haifengl.github.io/smile/index.html">
    <title>Smile - Statistical Machine Intelligence and Learning Engine</title>
    <dc:date>2016-09-26T14:38:31+00:00</dc:date>
    <link>http://haifengl.github.io/smile/index.html</link>
    <dc:creator>arthegall</dc:creator><dc:subject>smile java machinelearning opensource software scala</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:a6144436f347/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:smile"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:java"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:machinelearning"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:opensource"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:scala"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://www.biostars.org/p/725/">
    <title>Which Chip Seq Peak Callers Do You Use? (Biostars)</title>
    <dc:date>2016-09-26T14:15:30+00:00</dc:date>
    <link>https://www.biostars.org/p/725/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Excuse to list these links: 
1. BayesPeak http://www.ncbi.nlm.nih.gov/pubmed/19772557
2. HPeak http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2912305/
3. ODIN http://www.ncbi.nlm.nih.gov/pubmed/25371479
4. "tiered HMM" https://www.ncbi.nlm.nih.gov/pubmed/23570996]]></description>
<dc:subject>chip-seq bioinformatics software list genomics sequence-analysis chromatin</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:eb9d91ba6e85/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:chip-seq"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:list"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:sequence-analysis"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:chromatin"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.colm.net/open-source/ragel/">
    <title>Ragel State Machine Compiler</title>
    <dc:date>2016-09-16T12:37:54+00:00</dc:date>
    <link>http://www.colm.net/open-source/ragel/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>state-machines compiler fsm how-to software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:991b86de9102/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:state-machines"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:compiler"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:fsm"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:how-to"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://quantlib.org/docs.shtml">
    <title>QuantLib Documentation</title>
    <dc:date>2016-09-07T17:08:20+00:00</dc:date>
    <link>http://quantlib.org/docs.shtml</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Ongoing back-of-my-mind thought: maybe some of this stuff could be repurposed for some online learning / streaming data applications.  ]]></description>
<dc:subject>finance library software quantlib open-source</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:37cfdfa44031/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:finance"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:quantlib"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/takaki/jdip">
    <title>takaki/jdip: A fork of http://sourceforge.net/projects/jdip/, refactoring with modern Java technology.</title>
    <dc:date>2016-09-06T16:10:32+00:00</dc:date>
    <link>https://github.com/takaki/jdip</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Update of jDip, that works, I hope]]></description>
<dc:subject>diplomacy software java gpl games</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:f81ad010c86a/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:java"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:gpl"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:games"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/pixelogik/NearPy">
    <title>pixelogik/NearPy: Python framework for fast (approximated) nearest neighbour search in large, high-dimensional data sets using different locality-sensitive hashes.</title>
    <dc:date>2016-09-01T18:12:21+00:00</dc:date>
    <link>https://github.com/pixelogik/NearPy</link>
    <dc:creator>arthegall</dc:creator><dc:subject>nearest-neighbor python library software open-source</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:6fa77e16687d/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:nearest-neighbor"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:python"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://www.npmjs.com/package/pdfutils">
    <title>pdfutils</title>
    <dc:date>2016-08-26T18:06:52+00:00</dc:date>
    <link>https://www.npmjs.com/package/pdfutils</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[afaict, a decent Node-wrapper around poppler? ]]></description>
<dc:subject>poppler pdf data-extraction file-formats software library open-source gpl</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:e7861f333895/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:poppler"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:pdf"/>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:file-formats"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:gpl"/>
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</item>
<item rdf:about="https://github.com/nsf/termbox">
    <title>nsf/termbox: Library for writing text-based user interfaces</title>
    <dc:date>2016-04-15T18:23:32+00:00</dc:date>
    <link>https://github.com/nsf/termbox</link>
    <dc:creator>arthegall</dc:creator><dc:subject>text api gui library software open-source</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:d58b82fe1f5a/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:text"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:api"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:gui"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/ContentMine/getpapers">
    <title>ContentMine/getpapers</title>
    <dc:date>2016-04-09T11:26:29+00:00</dc:date>
    <link>https://github.com/ContentMine/getpapers</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["Get metadata, fulltexts or fulltext URLs of papers matching a search query"]]></description>
<dc:subject>node npm open-source text-mining software github</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:fe58865a9ded/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:node"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:npm"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:text-mining"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://mapzen.com/blog/inside-libpostal">
    <title>Inside Libpostal - a fast, multilingual, international street address parser trained on OpenStreetMap data · Mapzen</title>
    <dc:date>2016-03-29T03:30:06+00:00</dc:date>
    <link>https://mapzen.com/blog/inside-libpostal</link>
    <dc:creator>arthegall</dc:creator><dc:subject>geocoding open-source gis blog-post software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:3197c9285521/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:geocoding"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:gis"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:blog-post"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4717906/">
    <title>Pathway and Network Analysis of Cancer Genomes</title>
    <dc:date>2016-03-27T11:16:51+00:00</dc:date>
    <link>http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4717906/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>bioinformatics software via:ryan-williams genomics cancer</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:21fd8390ae21/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:ryan-williams"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:cancer"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://sourceforge.net/blog/january-2014-potm/">
    <title>January 2014 Project of the Month, Minsky | SourceForge Community Blog</title>
    <dc:date>2016-01-29T18:11:55+00:00</dc:date>
    <link>http://sourceforge.net/blog/january-2014-potm/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>economics modeling simulation software open-source</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:3a7a733cffeb/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:economics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:modeling"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:simulation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://mash.readthedocs.org/en/latest/">
    <title>Preprint — mash 1.0 documentation</title>
    <dc:date>2016-01-05T04:57:45+00:00</dc:date>
    <link>http://mash.readthedocs.org/en/latest/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["Fast genome and metagenome distance estimation using MinHash"]]></description>
<dc:subject>minhash genomics tool software documentation metagenomics</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:1d5addccddcd/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:minhash"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:documentation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:metagenomics"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://github.com/BurntSushi/rust-csv">
    <title>BurntSushi/rust-csv</title>
    <dc:date>2015-10-15T19:30:08+00:00</dc:date>
    <link>https://github.com/BurntSushi/rust-csv</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Rust CSV parsing]]></description>
<dc:subject>rust csv parsing library software open-source github</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:0ff4cae61c06/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:rust"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:csv"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:parsing"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:github"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://hackage.haskell.org/package/chatter">
    <title>chatter: A library of simple NLP algorithms. | Hackage</title>
    <dc:date>2015-10-10T11:31:14+00:00</dc:date>
    <link>https://hackage.haskell.org/package/chatter</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[POS tagging, python implementation.]]></description>
<dc:subject>nlp python open-source software pos-tagging</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:a5967953ce5c/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:nlp"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:python"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:pos-tagging"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://www.iterm2.com/downloads.html">
    <title>Downloads - iTerm2 - Mac OS Terminal Replacement</title>
    <dc:date>2015-10-09T18:52:41+00:00</dc:date>
    <link>https://www.iterm2.com/downloads.html</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Possible replacement for TotalTerminal (which I love, but is no longer under active development, says its webpage)]]></description>
<dc:subject>terminal mac os-x tool software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:26e67cbdeaf1/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:terminal"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mac"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:os-x"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://blog.unlimitedlabs.com/post/130097884236/introducing-orchestra">
    <title>Unlimited Blabs — Introducing Orchestra</title>
    <dc:date>2015-09-29T16:23:59+00:00</dc:date>
    <link>http://blog.unlimitedlabs.com/post/130097884236/introducing-orchestra</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Adam is smart, this kind of project is worth paying attention to.]]></description>
<dc:subject>orchestra marcua announcement software workflow</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:727b08a3f485/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:orchestra"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:marcua"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:announcement"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:workflow"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="https://phenotips.org/">
    <title>PhenoTips</title>
    <dc:date>2015-08-07T14:04:12+00:00</dc:date>
    <link>https://phenotips.org/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[organizing and analyzing phenotypic data from patients with genetic disorders.]]></description>
<dc:subject>phenotypes genetics research software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:ef0ac2283b13/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:phenotypes"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genetics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:research"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
</rdf:Bag></taxo:topics>
</item>
<item rdf:about="http://snpeff.sourceforge.net/SnpSift.html">
    <title>SnpSift</title>
    <dc:date>2015-05-25T19:14:19+00:00</dc:date>
    <link>http://snpeff.sourceforge.net/SnpSift.html</link>
    <dc:creator>arthegall</dc:creator><dc:subject>variant annotation genomics tool tutorial software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:d4bf01566c53/</dc:identifier>
<taxo:topics><rdf:Bag>	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:variant"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:annotation"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:genomics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tool"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:tutorial"/>
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</item>
<item rdf:about="https://github.com/tabulapdf/tabula-extractor">
    <title>tabulapdf/tabula-extractor</title>
    <dc:date>2015-05-25T19:13:56+00:00</dc:date>
    <link>https://github.com/tabulapdf/tabula-extractor</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Ruby library (from NYTimes) for extracting tables from PDFs.]]></description>
<dc:subject>ruby library software open-source pdf text-extraction nyt</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:820c7a05921e/</dc:identifier>
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<item rdf:about="http://lightning-viz.org/visualizations/#matrix">
    <title>Lightning | Data Visualization Server</title>
    <dc:date>2015-04-20T14:00:46+00:00</dc:date>
    <link>http://lightning-viz.org/visualizations/#matrix</link>
    <dc:creator>arthegall</dc:creator><dc:subject>visualization spark data software open-source</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
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<item rdf:about="http://homer.salk.edu/homer/">
    <title>Homer Software and Data Download</title>
    <dc:date>2015-04-20T13:43:15+00:00</dc:date>
    <link>http://homer.salk.edu/homer/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>motif-discovery software bioinformatics genomics</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:2aadfb07e9e2/</dc:identifier>
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</item>
<item rdf:about="https://www.packer.io/">
    <title>Packer by HashiCorp</title>
    <dc:date>2015-01-26T02:51:18+00:00</dc:date>
    <link>https://www.packer.io/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Exactly what I'd been looking for.]]></description>
<dc:subject>via:earl virtualization virtual-box tool software devops</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:509a94875800/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:devops"/>
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</item>
<item rdf:about="http://www.rdrop.com/users/paulmck/scalability/paper/whymb.2010.07.23a.pdf">
    <title>McKenney, &quot;Memory Barriers: A Hardware View for Software Hackers&quot;</title>
    <dc:date>2015-01-09T13:21:38+00:00</dc:date>
    <link>http://www.rdrop.com/users/paulmck/scalability/paper/whymb.2010.07.23a.pdf</link>
    <dc:creator>arthegall</dc:creator><dc:subject>memory-barriers tutorial ibm hardware computer-architecture software distributed-systems caching cache-coherence</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:f6160af62821/</dc:identifier>
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</item>
<item rdf:about="http://scip.zib.de/">
    <title>SCIP</title>
    <dc:date>2015-01-09T07:04:59+00:00</dc:date>
    <link>http://scip.zib.de/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>integer-programming mixed-integer-programming optimization software</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:62913ce726a1/</dc:identifier>
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<item rdf:about="http://square.github.io/okhttp/">
    <title>OkHttp</title>
    <dc:date>2014-12-16T04:01:59+00:00</dc:date>
    <link>http://square.github.io/okhttp/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Replacement for my standard use of Apache's HTTPClient, I hope.]]></description>
<dc:subject>http client java library software open-source via:tamr</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:af527aa6382f/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:via:tamr"/>
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</item>
<item rdf:about="http://www.hsph.harvard.edu/statinformatics/soft/">
    <title>Statistical Informatics for Cancer Research</title>
    <dc:date>2014-10-08T11:08:17+00:00</dc:date>
    <link>http://www.hsph.harvard.edu/statinformatics/soft/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Code for the SNP-Kernel Association Test (SKAT) ]]></description>
<dc:subject>skat software bioinformatics association-test genomics population-genetics</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:0cabeaf4e136/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:population-genetics"/>
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</item>
<item rdf:about="http://khan.github.io/KaTeX/">
    <title>KaTeX – The fastest math typesetting library for the web</title>
    <dc:date>2014-09-17T18:00:40+00:00</dc:date>
    <link>http://khan.github.io/KaTeX/</link>
    <dc:creator>arthegall</dc:creator><dc:subject>khan-academy latex mathematics typesetting library software open-source</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:fcc3742f703c/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:latex"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:mathematics"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:typesetting"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:library"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:open-source"/>
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</item>
<item rdf:about="https://mathgen.stats.ox.ac.uk/genetics_software/hapgen/hapgen2.html">
    <title>HAPGEN version 2</title>
    <dc:date>2014-08-25T10:42:07+00:00</dc:date>
    <link>https://mathgen.stats.ox.ac.uk/genetics_software/hapgen/hapgen2.html</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["HAPGEN2 is available free to use for academic use only." --- ARRRRRGGGHGHGghghg.]]></description>
<dc:subject>licensing software genetics bioinformatics</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:1d9fe4a9526a/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:bioinformatics"/>
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</item>
<item rdf:about="http://bogdan.bioinformatics.ucla.edu/software/impg/">
    <title>ImpG-Summary – Imputation from summary statistics | Bogdan Lab</title>
    <dc:date>2014-08-25T10:36:26+00:00</dc:date>
    <link>http://bogdan.bioinformatics.ucla.edu/software/impg/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["The software is free for non-commercial use, and may be licensed for commercial use." --- arrrrrgghghghgh.]]></description>
<dc:subject>licensing software bioinformatics genetics gwas association-test</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:b91e5d7a1833/</dc:identifier>
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</item>
<item rdf:about="http://sourceforge.net/projects/breakway/">
    <title>Breakway | Free software downloads at SourceForge.net</title>
    <dc:date>2014-07-03T19:37:05+00:00</dc:date>
    <link>http://sourceforge.net/projects/breakway/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA["A SV detection algorithm I wrote when I was learning Perl." ]]></description>
<dc:subject>via-twitter code software bioinformatics open-source genomics work</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:0f8049d9170e/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:work"/>
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</item>
<item rdf:about="http://code.google.com/p/unfinnigan/">
    <title>unfinnigan - Painless extraction of mass spectra from Thermo &quot;raw&quot; files - Google Project Hosting</title>
    <dc:date>2014-06-23T12:42:56+00:00</dc:date>
    <link>http://code.google.com/p/unfinnigan/</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Proprietary-format parsing for mass spec files ("raw" files) ]]></description>
<dc:subject>thermo-fisher mass-spec file-format parser software opensource</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:e9843c1d43a4/</dc:identifier>
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	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:file-format"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:parser"/>
	<rdf:li rdf:resource="https://pinboard.in/u:arthegall/t:software"/>
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</item>
<item rdf:about="https://github.com/aphyr/timelike">
    <title>aphyr/timelike</title>
    <dc:date>2014-05-08T01:25:58+00:00</dc:date>
    <link>https://github.com/aphyr/timelike</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[Library (clojure) for simulating parallel systems.]]></description>
<dc:subject>aphyr via:carlyeks simulation software tool</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:1888750ec0ae/</dc:identifier>
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<item rdf:about="https://github.com/tdanford/chrome-cli">
    <title>tdanford/chrome-cli</title>
    <dc:date>2014-02-11T14:46:16+00:00</dc:date>
    <link>https://github.com/tdanford/chrome-cli</link>
    <dc:creator>arthegall</dc:creator><description><![CDATA[A command-line tool for interacting with tabs in Chrome.  The original repo was targeting 10.9, but I have 10.8, so I've added some code in my own repo to target 10.8 -- seems to work fine.

I also added the ability to output all your tab information (include page title, tab ID, and URL) as a TSV using a new 'info tabs' option.  This should make it easier to grep through your hundreds of open tabs.]]></description>
<dc:subject>chrome cli tool software via:chl github</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:704108953bfb/</dc:identifier>
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</item>
<item rdf:about="http://wiki.tinymux.org/index.php/Building">
    <title>Building - TinyMUX</title>
    <dc:date>2014-01-30T18:15:37+00:00</dc:date>
    <link>http://wiki.tinymux.org/index.php/Building</link>
    <dc:creator>arthegall</dc:creator><dc:subject>tinymux mush software wiki personal</dc:subject>
<dc:source>https://pinboard.in/</dc:source>
<dc:identifier>https://pinboard.in/u:arthegall/b:222924097afe/</dc:identifier>
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