https://pinboard.in/u:Vaguery/public/ recent bookmarks from Vaguery 2025-12-01T13:11:59+00:00 https://iopscience.iop.org/article/10.1088/1742-5468/ae120e Vaguery neural-networks simulation Hopfield-networks rather-interesting nonlinear-dynamics to-understand optimal-control https://pinboard.in/ https://pinboard.in/u:Vaguery/b:a65bf7835b75/ 2025-10-29T22:03:01+00:00 https://arxiv.org/abs/2403.18369 Vaguery materials-science engineering finite-elements nonlinear-dynamics simulation rather-interesting to-understand consider:metamaterials consider:numerical-methods consider:approximation https://pinboard.in/ https://pinboard.in/u:Vaguery/b:06e153960f94/ 2025-08-17T14:15:14+00:00 https://arxiv.org/abs/2408.03458 Vaguery pattern-formation reaction-diffusion-systems nonlinear-dynamics rather-interesting simulation to-simulate to-write-about consider:object-boundaries https://pinboard.in/ https://pinboard.in/u:Vaguery/b:bd6e5c1bf1b4/ 2025-08-10T11:59:39+00:00 https://www.mdpi.com/2504-3110/9/7/475 Vaguery biophysics fractals continued-fractions models-and-modes rather-interesting simulation to-simulate to-write-about consider:nonlinearity https://pinboard.in/ https://pinboard.in/u:Vaguery/b:faf23619376e/ 2024-09-21T13:56:03+00:00 https://arxiv.org/abs/2302.08600 Vaguery agent-based social-networks simulation opinion epidemiology to-write-about to-simulate consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d1f0c368b473/ 2024-09-17T20:46:18+00:00 https://arxiv.org/abs/2109.06298 Vaguery discrepancy numerical-methods rather-interesting algorithms low-discrepancy-sequences simulation nudge-targets consider:looking-to-see consider:performance-measures https://pinboard.in/ https://pinboard.in/u:Vaguery/b:de2649ccabc1/ 2024-09-04T22:48:29+00:00 https://arxiv.org/abs/2409.02086 Vaguery agent-based stochastic-systems nonlinear-dynamics simulation numerical-methods software-development-is-not-programming rather-interesting to-write-about to-pass-along reproducibility https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d69b0e73e586/ 2024-08-08T14:04:20+00:00 https://arxiv.org/abs/2304.02354 Vaguery materials-science simulation cellular-automata neural-networks to-understand metallurgy rather-interesting collective-behavior algorithms to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:73312bb556c6/ 2024-08-08T13:42:08+00:00 https://arxiv.org/abs/2407.11713 Vaguery engineering-design finite-elements-analysis Python numerical-methods scientific-computing simulation rather-interesting library to-understand to-write-about consider:optimization consider:benchmarking https://pinboard.in/ https://pinboard.in/u:Vaguery/b:3ed33361e396/ 2024-07-03T10:48:08+00:00 https://arxiv.org/abs/2312.13944 Vaguery biochemistry pharmaceutical design-automation rather-interesting simulation molecular-design molecular-biology https://pinboard.in/ https://pinboard.in/u:Vaguery/b:9f055f81cf4a/ 2024-03-31T01:02:42+00:00 https://arxiv.org/abs/2108.08353 Vaguery cellular-automata diffusion simulation rather-interesting to-write-about to-simulate consider:clarification https://pinboard.in/ https://pinboard.in/u:Vaguery/b:7bb43ea2ff22/ 2024-03-29T14:37:49+00:00 https://arxiv.org/abs/2105.11143 Vaguery cellular-automata rather-interesting simulation materials-science to-write-about to-simulate consider:grid-interactions https://pinboard.in/ https://pinboard.in/u:Vaguery/b:eac4a64275b3/ 2023-10-10T10:14:45+00:00 https://arxiv.org/abs/2209.10687 Vaguery motion-planning robotics simulation rather-interesting adaptive-control control-theory to-understand to-visualize https://pinboard.in/ https://pinboard.in/u:Vaguery/b:b45bfd4b7b0a/ 2022-05-14T10:50:13+00:00 https://arxiv.org/abs/1203.4667 Vaguery analog-computing representation simulation computational-complexity to-understand nonlinear-dynamics https://pinboard.in/ https://pinboard.in/u:Vaguery/b:adde835968e4/ 2022-04-02T12:23:34+00:00 https://arxiv.org/abs/1602.00546 Vaguery analog-computing rather-interesting looking-to-see simulation diffyQs nonlinear-dynamics classification to-write-about to-simulate consider:feature-discovery consider:structure-function https://pinboard.in/ https://pinboard.in/u:Vaguery/b:42bbe78494a1/ 2022-03-19T12:11:35+00:00 https://arxiv.org/abs/1805.02354 Vaguery flocking boids simulation complexology self-organization collective-behavior to-write-about to-visualize https://pinboard.in/ https://pinboard.in/u:Vaguery/b:c4d2ad67eead/ 2022-03-15T15:55:57+00:00 https://arxiv.org/abs/1511.09203 Vaguery economics agent-based simulation looking-to-see complexology now-do-MMT to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:8eb136b79800/ 2022-03-06T11:58:15+00:00 https://arxiv.org/abs/2104.03704 Vaguery billiards simulation diffusion statistical-mechanics rather-interesting nonlinear-dynamics looking-to-see to-write-about consider:simulation consider:visualization https://pinboard.in/ https://pinboard.in/u:Vaguery/b:a4152eda9c31/ 2022-03-02T11:35:57+00:00 https://arxiv.org/abs/2007.15642 Vaguery reaction-networks rather-interesting theoretical-biology nonlinear-dynamics simulation abstraction to-write-about consider:feature-discovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:961a3a9f2b02/ 2022-02-11T15:27:58+00:00 https://arxiv.org/abs/1908.07874 Vaguery neural-networks analog-computing rather-interesting representation simulation engineering-design to-write-about to-understand consider:getting-a-dang-simulator https://pinboard.in/ https://pinboard.in/u:Vaguery/b:f8c80b9f3af0/ 2022-01-24T12:29:52+00:00 https://arxiv.org/abs/1804.02795 Vaguery agent-based simulation numerical-methods mechanics rather-interesting to-write-about to-understand consider:visualization https://pinboard.in/ https://pinboard.in/u:Vaguery/b:cb4d2381c591/ 2021-11-04T12:52:29+00:00 https://arxiv.org/abs/1702.08411 Vaguery evolutionary-biology theoretical-biology simulation rather-interesting to-write-about to-simulate consider:constant-learning-in-GP https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d8eddbc38602/ 2021-11-04T09:54:31+00:00 https://arxiv.org/abs/1705.08756 Vaguery artificial-life evolutionary-biology neural-networks rather-interesting simulation self-organization to-write-about to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:21541c9410b0/ 2021-10-06T11:26:55+00:00 https://arxiv.org/abs/1709.08999 Vaguery collective-behavior nonlinear-dynamics agent-based simulation control-theory operations-research rather-interesting rather-odd to-write-about to-simulate consider:visualization consider:explaining-better mechanism-design https://pinboard.in/ https://pinboard.in/u:Vaguery/b:efe6d1d95716/ 2021-06-27T10:12:23+00:00 https://arxiv.org/abs/2012.09715 Vaguery numerical-methods approximation rather-interesting simulation sampling performance-measure computational-complexity nudge-targets consider:representation consider:performance-measures consider:lexicase consider:extreme-values https://pinboard.in/ https://pinboard.in/u:Vaguery/b:8ed61cde1044/ 2021-06-27T10:10:43+00:00 https://arxiv.org/abs/2102.00113 Vaguery numerical-methods diffy-Qs nonlinear-dynamics inverse-problems rather-interesting to-understand simulation representation consider:performance-measures consider:lexicase https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d31989508c16/ 2021-06-20T10:46:24+00:00 https://arxiv.org/abs/1801.05247 Vaguery simulation aggregation algorithms information-theory rather-interesting to-understand consider:simpler-landscape-results consider:landscape-structure https://pinboard.in/ https://pinboard.in/u:Vaguery/b:78ebfa32c717/ 2021-05-22T21:50:23+00:00 https://arxiv.org/abs/2012.05503 Vaguery dynamical-systems reaction-networks simulation algorithms approximation sampling rather-interesting to-write-about consider:general-case consider:ReQ systems-biology https://pinboard.in/ https://pinboard.in/u:Vaguery/b:59ee2e9eec9c/ 2021-05-19T10:41:16+00:00 https://arxiv.org/abs/2104.08636 Vaguery cultural-dynamics evolutionary-economics agent-based rather-interesting simulation to-simulate to-write-about consider:structural-variants https://pinboard.in/ https://pinboard.in/u:Vaguery/b:583bc79ffed3/ 2021-05-18T22:11:15+00:00 https://github.com/thi-ng/geom Vaguery clojure physics simulation graphics library to-understand to-use consider:granular-materials consider:mechanisms https://pinboard.in/ https://pinboard.in/u:Vaguery/b:534786dcaee0/ 2020-11-29T15:21:01+00:00 https://arxiv.org/abs/2009.00295 Vaguery simulation fluid-dynamics representation looking-to-see rather-interesting modeling-is-not-mathematics to-write-about consider:simulation approximation https://pinboard.in/ https://pinboard.in/u:Vaguery/b:a4de464b0f00/ 2020-11-27T00:31:37+00:00 https://arxiv.org/abs/2005.02901 Vaguery granular-materials simulation constraint-satisfaction rather-interesting nonlinear-dynamics to-write-about to-simulate consider:animation https://pinboard.in/ https://pinboard.in/u:Vaguery/b:f30e0e3c8a7e/ 2020-10-15T10:29:17+00:00 https://arxiv.org/abs/cond-mat/0203237 Vaguery granular-materials simulation models rather-interesting to-understand nonlinear-dynamics phase-transitions to-write-about consider:looking-to-see consider:simulation https://pinboard.in/ https://pinboard.in/u:Vaguery/b:2718437398e7/ 2020-10-14T11:31:57+00:00 https://arxiv.org/abs/1902.00565 Vaguery granular-materials packing looking-to-see materials-science to-write-about simulation condensed-matter liquid-crystals experiment https://pinboard.in/ https://pinboard.in/u:Vaguery/b:9f1c6eb61ca8/ 2020-10-14T11:12:16+00:00 https://www.researchgate.net/publication/10726190_Random_Packings_of_Spheres_and_Spherocylinders_Simulated_by_Mechanical_Contraction Vaguery granular-materials simulation liquid-crystals materials-science industrial-engineering to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:791c4477416a/ 2020-08-05T16:25:00+00:00 https://arxiv.org/abs/1709.10043 Vaguery pattern-formation Turing-systems reaction-networks rather-interesting simulation to-understand to-simulate pattern-discovery consider:feature-discovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:4712e9eddddb/ 2020-07-15T20:35:59+00:00 http://www.cleonis.nl/physics/phys256/coupling.php Vaguery dynamical-systems simulation physics rather-interesting via:twitter to-write-about to-simulate consider:exponents consider:varying-constants https://pinboard.in/ https://pinboard.in/u:Vaguery/b:c4a410a72bee/ 2020-06-14T12:42:05+00:00 https://www.biorxiv.org/content/10.1101/120097v1?rss=1 Vaguery theoretical-biology life-history artificial-life simulation rather-interesting to-write-about to-simulate consider:visualization https://pinboard.in/ https://pinboard.in/u:Vaguery/b:670e114b9954/ 2020-06-14T11:09:51+00:00 https://arxiv.org/abs/2004.13935 Vaguery hypergraphs dynamical-systems stochastic-systems rather-interesting simulation to-write-about to-simulate consider:structure consider:extreme-values https://pinboard.in/ https://pinboard.in/u:Vaguery/b:bc1e179bbbe4/ 2020-05-24T10:45:31+00:00 https://arxiv.org/abs/1603.07147 Vaguery simulation physics! condensed-matter rather-interesting dimers have-proposed to-write-about to-simulate consider:animation https://pinboard.in/ https://pinboard.in/u:Vaguery/b:2ee3c1e2d639/ 2020-05-22T21:18:09+00:00 https://arxiv.org/abs/1904.02630 Vaguery active-matter nanotechnology biophysics rather-interesting simulation fluid-dynamics to-understand to-write-about to-simulate consider:animations https://pinboard.in/ https://pinboard.in/u:Vaguery/b:209748cf4968/ 2020-05-18T21:18:32+00:00 https://arxiv.org/abs/1803.04221 Vaguery0 independent of (W1,W2). Focusing on the presence and strength of asymptotic tail dependence, as expressed through commonly-used summary parameters, broad factors that affect the results are: the heaviness of the tails of R and (W1,W2), the shape of the support of (W1,W2), and dependence between (W1,W2). When R is distinctly lighter tailed than (W1,W2), the extremal dependence of (X1,X2) is typically the same as that of (W1,W2), whereas similar or heavier tails for R compared to (W1,W2) typically result in increased extremal dependence. Similar tail heavinesses represent the most interesting and technical cases, and we find both asymptotic independence and dependence of (X1,X2) possible in such cases when (W1,W2) exhibit asymptotic independence. The bivariate case often directly extends to higher-dimensional vectors and spatial processes, where the dependence is mainly analyzed in terms of summaries of bivariate sub-vectors. The results unify and extend many existing examples, and we use them to propose new models that encompass both dependence classes. ]]> probability-theory representation bivariate-distributions correlation simulation approximation rather-interesting to-understand to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:98f5d851db63/ 2020-05-17T22:21:12+00:00 https://arxiv.org/abs/1803.04918 Vaguery condensed-matter simulation granular-materials rather-interesting metamaterials to-write-about to-simulate consider:simulation consider:generalizations https://pinboard.in/ https://pinboard.in/u:Vaguery/b:36df0ef26007/ 2020-05-14T00:52:20+00:00 https://arxiv.org/abs/1903.00441 Vaguery lattice-polymers molecular-design physics! simulation rather-interesting to-simulate looking-to-see virtual-experiments https://pinboard.in/ https://pinboard.in/u:Vaguery/b:5eba82b2292b/ 2020-05-04T11:54:41+00:00 https://arxiv.org/abs/1707.00083 Vaguery graph-theory network-theory probability-theory rather-interesting looking-to-see simulation feature-construction to-write-about to-simulate consider:variation consider:inverse-problem https://pinboard.in/ https://pinboard.in/u:Vaguery/b:dc0a1c70540d/ 2020-05-03T12:07:57+00:00 https://arxiv.org/abs/1904.05970 Vaguery packing feature-discovery condensed-matter simulation rather-interesting constrained-dynamics to-simulate experiment consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d342d0ef3be2/ 2020-03-20T16:35:16+00:00 https://arxiv.org/abs/1901.02950 Vaguery nonlinear-dynamics electronics engineering-design rather-interesting digital-circuits verification testing simulation to-write-about to-simulate consider:genetic-programming https://pinboard.in/ https://pinboard.in/u:Vaguery/b:86a6958a9054/ 2020-03-08T18:58:14+00:00 https://arxiv.org/abs/1311.2032 Vaguery computational-geometry data-structures simulation rather-interesting to-understand to-simulate to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:b13a69d71b9b/ 2020-02-09T01:14:49+00:00 http://htsang.wikidot.com/research Vaguery structural-biology polymer-folding biochemistry biophysics simulation metaheuristics energy-landscapes rather-interesting to-write-about to-simulate to-visualize https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d531cf9636cd/ 2020-02-09T01:06:09+00:00 http://manual.gromacs.org/documentation/2019/how-to/index.html Vaguery structural-biology simulation software open-source rather-interesting to-simulate to-write-about consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:9395b17ef4db/ 2020-01-26T14:06:07+00:00 https://arxiv.org/abs/1803.11511 Vaguery granular-materials mixing self-organization rather-interesting physics! simulation looking-to-see to-write-about to-simulate packing https://pinboard.in/ https://pinboard.in/u:Vaguery/b:11d862fc943c/ 2020-01-23T02:10:12+00:00 https://arxiv.org/abs/1012.0369 Vagueryδc, which we calculate analytically, a single contact breaks and fluctuations abruptly spread to all harmonic modes. As δ increases further all discrete harmonic modes disappear into a continuous frequency band. We find that <δc>∼Δϕ/Nλ, where 1>λ>0.5, and thus jammed particulate systems are inherently nonharmonic with no linear vibrational response regime as N→∞ over the full range of Δϕ, and as Δϕ→0 at any N. ]]> granular-materials physics! nonlinear-dynamics complexology rather-interesting simulation looking-to-see have-you-tried-thwacking-it? ah-yes-I-see-you-did https://pinboard.in/ https://pinboard.in/u:Vaguery/b:ad58ef1f419b/ 2020-01-22T00:47:27+00:00 http://simjs.com/index.html Vaguery discrete-event-simulator library javascript to-try simulation engineering-design prediction optimization https://pinboard.in/ https://pinboard.in/u:Vaguery/b:e6db3adfa73e/ 2020-01-19T18:38:45+00:00 https://arxiv.org/abs/1911.09792 Vaguery gerrymandering voting looking-to-see simulation rather-interesting fairness optimization multiobjective-optimization to-simulate to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:93dfb88e453c/ 2020-01-14T21:45:13+00:00 https://arxiv.org/abs/math/0508248 Vaguery knot-theory simulation rather-interesting algorithms optimization computational-geometry to-write-about to-try https://pinboard.in/ https://pinboard.in/u:Vaguery/b:05711f6ad73b/ 2020-01-12T14:47:48+00:00 https://arxiv.org/abs/1812.01502 Vaguery parallel-processing distributed-processing algorithms collective-behavior simulation numerical-methods heuristics to-understand to-write-about optimization https://pinboard.in/ https://pinboard.in/u:Vaguery/b:0b8938e31ee0/ 2020-01-12T14:20:41+00:00 https://arxiv.org/abs/1803.02875 Vaguery quantum physics simulation inverse-problems neural-networks deep-learning rather-interesting to-understand https://pinboard.in/ https://pinboard.in/u:Vaguery/b:a31311ce3822/ 2020-01-10T21:01:53+00:00 https://arxiv.org/abs/1806.03333 Vaguery structural-biology RNA-folding hey-I-know-this-guy molecular-design simulation rather-interesting feature-construction to-write-about to-simulate consider:extreme-cases consider:feature-discovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:a438e8d14c51/ 2020-01-10T20:55:37+00:00 https://arxiv.org/abs/1410.8001 Vaguery complexology agent-based collective-behavior evolutionary-economics simulation to-write-about to-simulate coupled-oscillators https://pinboard.in/ https://pinboard.in/u:Vaguery/b:83f6fd17d7a3/ 2020-01-10T20:18:32+00:00 https://arxiv.org/abs/1804.01804 Vaguery metamaterials engineering-design rather-interesting biological-engineering simulation looking-to-see to-write-about to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:5aa957309126/ 2020-01-01T13:34:02+00:00 https://www.biorxiv.org/content/10.1101/376632v1?rss=1 Vaguery molecular-dynamics molecular-design rather-interesting biophysics solvation-dynamics simulation consider:combinatorial-chemistry https://pinboard.in/ https://pinboard.in/u:Vaguery/b:b1c118d44164/ 2019-12-29T10:08:11+00:00 https://arxiv.org/abs/1907.08103 Vaguery self-assembly nanohistory rather-interesting emergent-design simulation supramolecular-complexes looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d6e6f0fd7421/ 2019-11-03T11:48:18+00:00 https://arxiv.org/abs/1802.00296 Vaguery simulation numerical-methods Markov-models Monte-Carlo-models probability-theory algorithms horse-races rather-interesting to-write-about performance-measure approximation https://pinboard.in/ https://pinboard.in/u:Vaguery/b:c4efe05241f4/ 2019-10-26T13:04:06+00:00 https://arxiv.org/abs/1909.00196 Vaguery reaction-networks nonlinear-dynamics rather-interesting thermodynamics simulation to-write-about to-simulate probability-theory heavy-tailed-distributions https://pinboard.in/ https://pinboard.in/u:Vaguery/b:ffc77affc313/ 2019-10-26T12:36:43+00:00 https://arxiv.org/abs/1809.02331 Vaguery theoretical-biology boolean-networks reaction-networks simulation to-understand layer-cake-modeling to-simulate evo-devo https://pinboard.in/ https://pinboard.in/u:Vaguery/b:1d186466317b/ 2019-10-11T12:57:22+00:00 https://arxiv.org/abs/1909.12501 Vaguery food-webs rather-interesting theoretical-biology dynamical-systems collective-behavior nonlinear-dynamics looking-to-see simulation to-write-about to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:e0e2adccb467/ 2019-09-23T10:13:22+00:00 https://arxiv.org/abs/1904.08684 Vaguery numerical-methods approximation modeling-is-not-mathematics rather-interesting simulation consider:symbolic-regression generated-code to-understand to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:655f0a3f7a85/ 2019-09-21T22:45:52+00:00 https://queue.acm.org/detail.cfm?id=3212479 Vaguery programming-language philosophy-of-engineering rather-good define-your-terms security simulation hardware the-cultural-construction-of-abstractions https://pinboard.in/ https://pinboard.in/u:Vaguery/b:5b1176980b3a/ 2019-09-08T19:39:44+00:00 https://arxiv.org/abs/1810.01999 Vaguery rather-interesting granular-materials artificial-life simulation to-simulate resource-limitation theoretical-biology packing https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d3f9f8b14c27/ 2019-08-07T11:08:22+00:00 http://theorangeduck.com/page/subspace-neural-physics-fast-data-driven-interactive-simulation Vaguery simulation deep-learning rather-interesting via:twitter to-write-about to-do consider:eureqa consider:eureqa-hype https://pinboard.in/ https://pinboard.in/u:Vaguery/b:7525a6f3a3e3/