Pinboard (Vaguery)
https://pinboard.in/u:Vaguery/public/
recent bookmarks from Vaguery[1802.08188] The spatial Lambda-Fleming-Viot process with fluctuating selection2019-04-22T13:11:18+00:00
https://arxiv.org/abs/1802.08188
Vaguerypopulation-biology genetics simulation theoretical-biology evolutionary-biology nonlinear-dynamics robustness noisehttps://pinboard.in/https://pinboard.in/u:Vaguery/b:e8fa4e2f594e/Polygenic scores and tea drinking | gcbias2018-12-28T11:42:59+00:00
https://gcbias.org/2018/03/14/polygenic-scores-and-tea-drinking/
Vaguerygenetics bioinformatics GWAS good-example nature-and-nurture-sittin-in-a-tree population-biology cultural-normshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:906b1be19f45/[1808.05875] Co-evolution of nodes and links: diversity driven coexistence in cyclic competition of three species2018-08-20T11:35:14+00:00
https://arxiv.org/abs/1808.05875
Vaguerycoevolution theoretical-biology rather-interesting population-biology social-norms to-write-about to-simulate artificial-life it's-more-complicated-than-you-think complexology agent-basedhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:f60dbf50ce32/Estimating barriers to gene flow from distorted isolation by distance patterns | bioRxiv2018-03-31T12:20:27+00:00
https://www.biorxiv.org/content/early/2017/10/19/205484?rss=1
Vaguerypopulation-biology theoretical-biology rather-interesting simulation to-write-about consider:feature-discoveryhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:c1725559f8ac/[1404.6520] How to partition diversity2018-02-04T13:44:32+00:00
https://arxiv.org/abs/1404.6520
Vaguerydiversity population-biology bioinformatics philosophy-of-science algorithms statistics rather-interesting to-write-about to-understand consider:genetic-programming define-your-termshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:c21c80ffcd46/Variability in fitness effects and the limitations of lineage selection | bioRxiv2017-02-19T12:53:17+00:00
http://biorxiv.org/content/early/2017/02/11/107847?rss=1%2522
Vaguerypopulation-biology evolutionary-biology agent-based fitness define-your-terms rather-interesting to-write-about consider:effects-in-GAshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:7873ca366a9c/Genotypic complexity of Fisher's geometric model | bioRxiv2017-01-04T13:25:01+00:00
http://biorxiv.org/content/early/2016/12/23/096438?rss=1%2522
Vaguerypopulation-biology theoretical-biology theory-and-practice-sitting-in-a-tree fitness-landscapes models-and-modes to-write-about nudge-targets consider:rediscovery consider:robustness consider:multiobjective-versionshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:02ca5aad3afb/[1605.08717] Predicting patterns of long-term adaptation and extinction with population genetics2016-06-29T11:13:32+00:00
http://arxiv.org/abs/1605.08717#
Vaguerytheoretical-biology population-biology self-organization complex-systems power-laws nudge-targets consider:stress-testing consider:simulationhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:e355b9695d0e/[1504.03832] Almost all random graphs are amplifiers of selection for Birth-death dynamics, but suppressors of selection for death-Birth dynamics2016-03-15T13:04:44+00:00
http://arxiv.org/abs/1504.03832
Vaguerytheoretical-biology population-biology graph-theory simulation nonlinear-dynamics biases rather-interestinghttps://pinboard.in/https://pinboard.in/u:Vaguery/b:e2274fe54c5b/[1508.01453] Asymptotic Green's function for the stochastic reproduction of competing variants via Fisher's angular transformation2016-02-27T12:16:18+00:00
http://arxiv.org/abs/1508.01453
Vaguerypopulation-biology theoretical-biology fitness-landscapes nudge-targets consider:looking-to-seehttps://pinboard.in/https://pinboard.in/u:Vaguery/b:5cea4b1ab29f/[1507.08245] Epistasis and the structure of fitness landscapes: are experimental fitness landscapes compatible with Fisher's model?2016-02-24T23:34:40+00:00
http://arxiv.org/abs/1507.08245
Vagueryfitness-landscapes looking-to-see theory-and-practice-sitting-in-a-tree theoretical-biology population-biology modeling-is-not-mathematicshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:ec861139076b/[1509.01194] A mathematical analysis of the evolutionary benefits of sexual reproduction2016-02-22T12:19:11+00:00
http://arxiv.org/abs/1509.01194
Vaguerypopulation-biology theoretical-biology simple-models-of-the-evolution fitness-landscapes open-questions-that-aren't-especially-openhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:1ed870cfe173/[1602.03093] The effect of environmental stochasticity on species richness in neutral communities2016-02-17T11:27:30+00:00
http://arxiv.org/abs/1602.03093
Vagueryfitness-landscapes community-formation diversity theoretical-biology population-biology rather-interesting to-write-abouthttps://pinboard.in/https://pinboard.in/u:Vaguery/b:e27fee8844f1/[1506.06572] Stochastic evolutionary games in dynamic populations2016-02-17T11:19:44+00:00
http://arxiv.org/abs/1506.06572
Vaguerypopulation-biology game-theory signal-processing stochastic-resonance simulation rather-interesting generalization nudge-targets consider:looking-to-seehttps://pinboard.in/https://pinboard.in/u:Vaguery/b:cd647dc1c372/[1411.6322] The Complexity of Genetic Diversity2016-02-17T10:51:59+00:00
http://arxiv.org/abs/1411.6322
Vaguerypopulation-biology fitness-landscapes starting-to-actually-get-mad-about-them to-fixhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:8b855e3dc31d/[1505.06108] General formulation of Luria-Delbr{"u}ck distribution of the number of mutants2015-12-21T11:53:40+00:00
http://arxiv.org/abs/1505.06108
Vaguerypopulation-biology mutation theoretical-biology modeling-is-not-mathematics experiment consider:impact-on-folk-fitnesshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:7a5680dc272b/Convergent Evolution During Local Adaptation to Patchy Landscapes | bioRxiv2015-09-16T10:27:27+00:00
http://biorxiv.org/content/early/2015/09/09/006940
Vagueryevolutionary-biology population-biology adaptation biology rather-interesting experiment modelshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:dfc843fffa8a/[1501.04497] Food web assembly rules2015-07-31T11:56:23+00:00
http://arxiv.org/abs/1501.04497
Vagueryhey-I-know-this-guy food-webs community-assembly theoretical-biology population-biology ecology simulation self-organization nudge-targets rather-interestinghttps://pinboard.in/https://pinboard.in/u:Vaguery/b:595c4a571bfa/Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues. | bioRxiv2015-07-20T11:31:57+00:00
http://biorxiv.org/content/early/2015/07/09/022251
Vaguerytheoretical-biology developmental-biology evo-devo artificial-life population-biology self-organization rather-interesting morphology fitness-landscapes nudge-targets consider:detailed-reexaminationhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:055b93c5ae83/[1403.6333] Range Expansion of Heterogeneous Populations2015-07-05T11:40:04+00:00
http://arxiv.org/abs/1403.6333
Vaguerypopulation-biology microbiology rather-interesting simulation artificial-life nudge-targets consider:rediscovery consider:feature-discovery consider:looking-to-seehttps://pinboard.in/https://pinboard.in/u:Vaguery/b:d09c97da0aab/[1312.6321] The virus of my virus is my friend: ecological effects of virophage with alternative modes of coinfection2014-11-13T23:08:26+00:00
http://arxiv.org/abs/1312.6321
Vaguerypopulation-biology medical-technology nonlinear-dynamics competition theoretical-biology nudge-targets systems-biology biological-engineeringhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:7bbb29a9bec3/When is selection effective? | bioRxiv2014-11-07T12:53:12+00:00
http://biorxiv.org/content/early/2014/10/30/010934
Vaguerytheoretical-biology population-biology philosophy-of-science rather-interesting define-your-terms what-selection-"is"-for-examplehttps://pinboard.in/https://pinboard.in/u:Vaguery/b:6f3f83ca4b4b/Social evolution and genetic interactions in the short and long term | bioRxiv2014-11-07T12:51:25+00:00
http://biorxiv.org/content/early/2014/10/15/010371
Vaguerytheoretical-biology population-biology social-dynamics feisty nudge-targets consider:open-ended-explorationhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:8def1f037da5/[1408.5007] A Consistent Estimator of the Evolutionary Rate2014-10-25T13:04:12+00:00
http://arxiv.org/abs/1408.5007
Vaguerypopulation-biology evolutionary-biology statistics estimation inference interesting consider:use-in-evolutionary-algorithmshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:ec633798a95c/[1401.4040] A Wright-Fisher model with indirect selection2014-08-20T10:49:19+00:00
http://arxiv.org/abs/1401.4040
Vaguerypopulation-biology counterintuitive the-mangle-in-practice evolution nudge-targets consider:stress-testing consider:rediscovery consider:walking-therehttps://pinboard.in/https://pinboard.in/u:Vaguery/b:574a470403a0/[1402.6354] A tug-of-war between driver and passenger mutations in cancer and other adaptive processes2014-07-06T11:25:15+00:00
http://arxiv.org/abs/1402.6354
Vaguerytheoretical-biology population-biology cancer simulation diversity nudge-targets Wright-it-ain'thttps://pinboard.in/https://pinboard.in/u:Vaguery/b:2f931bc93f2d/[1309.0657] Human Genome Variation and the concept of Genotype Networks2014-02-22T12:47:05+00:00
http://arxiv.org/abs/1309.0657
Vaguerybioinformatics diversity networks population-biology GWAS interestinghttps://pinboard.in/https://pinboard.in/u:Vaguery/b:0a9ebdbd2d72/[1311.2435] The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps2013-12-02T13:02:34+00:00
http://arxiv.org/abs/1311.2435
Vaguerygenetics microbiology microflora microbial-ecology experiment population-biology interestinghttps://pinboard.in/https://pinboard.in/u:Vaguery/b:4f897027062e/[1309.1152] The inevitability of unconditionally deleterious substitutions during adaptation2013-11-28T11:54:30+00:00
http://arxiv.org/abs/1309.1152
Vagueryfitness-landscapes theoretical-biology population-biology alma-maters nudge-targetshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:657015baee58/[1310.8091] Role of detritus in a spatial food web model with diffusion2013-11-03T11:08:09+00:00
http://arxiv.org/abs/1310.8091
Vaguerytheoretical-biology population-biology ecology simulation models nudge-targetshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:15d8694e8d7d/[1309.3772] A Gene Regulatory Model of heterosis and speciation2013-09-17T17:47:44+00:00
http://arxiv.org/abs/1309.3772
VagueryKauffmania boolean-networks theoretical-biology population-biology actually-quite-interesting nudge-targets artificial-life hybrid-vigor epistasishttps://pinboard.in/https://pinboard.in/u:Vaguery/b:77151803403b/[1309.3312] Universality and predictability in the evolution of molecular quantitative traits2013-09-17T17:24:14+00:00
http://arxiv.org/abs/1309.3312
Vagueryfitness-landscapes evolutionary-biology population-biology quantitative-biology complexology neutral-networks meh?https://pinboard.in/https://pinboard.in/u:Vaguery/b:a7d71fcac17c/[1306.1652] On the accumulation of deleterious mutations during range expansions2013-07-21T14:16:23+00:00
http://arxiv.org/abs/1306.1652
Vaguerypopulation-biology evolution simulation experimenthttps://pinboard.in/https://pinboard.in/u:Vaguery/b:fcd0ef64f88c/[1307.4789] Reproductive Value in Graph-structured Populations2013-07-21T14:07:28+00:00
http://arxiv.org/abs/1307.4789
Vaguerypopulation-biology social-networks agent-based context you-need-not-just-the-motive-but-the-means-my-boyhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:df9f72e9cbea/[1301.0004] Population genetics of gene function2013-04-26T22:41:17+00:00
http://arxiv.org/abs/1301.0004
Vaguerypopulation-biology theoretical-biology evolution life-histories nudge-targets fitness-landscapes contingency define-your-terms-projecthttps://pinboard.in/https://pinboard.in/u:Vaguery/b:7adfea47a6a0/[1302.4267] Mutation Rules and the Evolution of Sparseness and Modularity in Biological Systems2013-04-10T11:01:14+00:00
http://arxiv.org/abs/1302.4267
Vaguerytheoretical-biology population-biology systems-biology robustness nudge-targets resilience network-theory interestinghttps://pinboard.in/https://pinboard.in/u:Vaguery/b:26db4361cc53/Guest post: Natural selection in real time via road kill « Why Evolution Is True2013-03-31T13:13:54+00:00
http://whyevolutionistrue.wordpress.com/2013/03/30/guest-post-selection-in-real-time-via-road-kill/
Vagueryevolution population-biology examples selection-in-actionhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:c3833fdee29e/[1211.3609] Neutral selection2013-03-18T20:17:04+00:00
http://arxiv.org/abs/1211.3609
Vagueryfitness-landscapes population-biology theoretical-biology nudge-targets simulationhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:6766f6824eb4/[1208.3185] Genealogies of rapidly adapting populations2013-03-10T11:53:33+00:00
http://arxiv.org/abs/1208.3185
Vaguerypopulation-biology experiment agent-based simulation nudge-targets consider-as-a-feature-extraction-problemhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:482e63ed0741/[1208.4973] Growth, competition and cooperation in spatial population genetics2013-03-06T18:57:35+00:00
http://arxiv.org/abs/1208.4973
Vaguerypopulation-biology genetics agent-based simulation complexologyhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:51638dd729fa/[1203.3884] A complex speciation-richness relationship in a simple neutral model2012-08-29T12:23:55+00:00
http://arxiv.org/abs/1203.3884
Vagueryevo-eco community-formation speciation diversity population-biology models nudge-targetshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:808a707b3338/[1208.0518] The efficacy of group selection is increased by coexistence dynamics within groups2012-08-29T12:16:20+00:00
http://arxiv.org/abs/1208.0518
Vagueryevolution population-biology theoretical-biology group-selection special-caseshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:60ca4d22b091/[1205.0665] What ecological factors shape species-area curves in neutral models?2012-08-28T12:02:57+00:00
http://arxiv.org/abs/1205.0665
Vaguerybiodiversity population-biology simulation neutral-evolution evolutionary-biologyhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:e0e038f0e596/[1208.0482] The concurrent evolution of cooperation and the population structures that support it2012-08-04T10:10:26+00:00
http://arxiv.org/abs/1208.0482
Vagueryagent-based evolutionary-algorithms evolutionary-economics game-theory population-biologyhttps://pinboard.in/https://pinboard.in/u:Vaguery/b:8255503c9cbb/[1205.2059] Emergence of clones in sexual populations2012-08-03T18:40:04+00:00
http://arxiv.org/abs/1205.2059
Vaguerypopulation-biology evolutionary-dynamics finite-size-effects models-and-modeshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:fa67d7bf6997/[1203.3367] Stochastic differential equations for evolutionary dynamics with demographic noise and mutations2012-07-02T22:05:08+00:00
http://arxiv.org/abs/1203.3367
Vagueryfinite-size-effects population-biology noise-in-design nudge-targetshttps://pinboard.in/https://pinboard.in/u:Vaguery/b:3900448921da/