https://pinboard.in/u:Vaguery/public/ recent bookmarks from Vaguery 2026-05-24T10:49:45+00:00 https://arxiv.org/abs/2408.05395 Vaguery systems-biology molecular-machinery medicine medical-technology network-theory pharmaceutical machine-learning rather-interesting models-and-modes reaction-networks systems-thinking https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d028f0a81a52/ 2026-01-18T20:44:41+00:00 https://arxiv.org/abs/2511.15533 Vaguery network-theory nonlinear-dynamics self-organization self-assembly rather-interesting complexology to-understand to-simulate consider:L1-geometry https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d8d44de8f4c9/ 2024-07-22T13:51:56+00:00 https://arxiv.org/abs/2211.13000 Vaguery network-theory cellular-automata measurement rather-interesting nonlinear-dynamics frequency-analysis feature-construction to-write-about consider:Boolean-networks https://pinboard.in/ https://pinboard.in/u:Vaguery/b:49aee90956e1/ 2023-05-21T12:25:38+00:00 https://arxiv.org/abs/2210.02753 Vaguery community-detection network-theory rather-interesting define-your-terms cultural-dynamics clustering https://pinboard.in/ https://pinboard.in/u:Vaguery/b:70b93a24603d/ 2023-04-30T00:38:47+00:00 https://arxiv.org/abs/2201.00972 Vaguery network-theory hypergraphs set-theory rather-interesting time-series social-networks feature-extraction to-understand https://pinboard.in/ https://pinboard.in/u:Vaguery/b:2d62f916e3c0/ 2022-09-04T12:27:42+00:00 https://www.biorxiv.org/content/10.1101/395442v1?rss=1 Vaguery boolean-networks Kauffmania network-theory control-theory rather-interesting looking-to-see nonlinear-dynamics to-write-about to-simulate consider:effect-basins https://pinboard.in/ https://pinboard.in/u:Vaguery/b:04bbc9e66fcd/ 2022-03-12T13:04:45+00:00 https://arxiv.org/abs/1905.04490 Vaguery graph-theory rewriting-systems rather-interesting combinatorics random-graphs network-theory to-understand to-write-about to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:e077ff5346e5/ 2022-02-11T15:20:55+00:00 https://arxiv.org/abs/1609.00149 Vaguery network-theory algorithms adversarial-tricksiness rather-interesting consider:updates consider:feature-discovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:60f822b79041/ 2022-01-26T13:47:02+00:00 https://arxiv.org/abs/1902.04882 Vaguery systems-biology nonlinear-dynamics biological-engineering network-theory rather-interesting phase-transitions to-understand to-write-about consider:looking-to-see consider:inverse-problem consider:genetic-programming https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d1e990a1dbc1/ 2022-01-26T13:40:08+00:00 https://arxiv.org/abs/2109.15069 Vaguery network-theory graph-theory feature-construction rather-interesting robustness algorithms numerical-methods to-write-about to-simulate consider:inverse-problem consider:weird-maxima percolation phase-transitions https://pinboard.in/ https://pinboard.in/u:Vaguery/b:4c1fae0a3809/ 2021-11-04T12:54:08+00:00 https://arxiv.org/abs/1703.04157 Vaguery statistics network-theory social-networks inverse-problems rather-interesting to-write-about to-simulate consider:visualization consider:privacy https://pinboard.in/ https://pinboard.in/u:Vaguery/b:7171afe1aa06/ 2021-11-04T12:51:00+00:00 https://arxiv.org/abs/1701.08787 Vaguery network-theory robustness security combinatorics feature-construction to-simulate to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:6d8a6eb2d889/ 2021-10-06T11:14:24+00:00 https://arxiv.org/abs/1712.08404 Vaguery engineering-design network-theory cybernetics machine-learning optimization feedback to-understand to-simulate consider:multiobjective-optimziation consider:lexicase https://pinboard.in/ https://pinboard.in/u:Vaguery/b:756fc87ef06b/ 2021-05-07T16:12:54+00:00 https://arxiv.org/abs/2103.10952 Vaguery nonlinear-dynamics robustness infrastructure power-grid rather-interesting network-theory to-simulate to-write-about consider:visualization consider:performance-measures https://pinboard.in/ https://pinboard.in/u:Vaguery/b:59a4b77b2c6c/ 2020-08-05T12:22:46+00:00 http://philsci-archive.pitt.edu/17448/ Vaguery academic-culture digital-humanities network-theory citation rather-interesting to-read https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d201382805dd/ 2020-07-22T14:37:31+00:00 https://arxiv.org/abs/1704.07067 Vaguery graph-theory algorithms network-theory operations-research optimization robustness performance-measure rather-interesting to-write-about to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:51a64f47738d/ 2020-07-15T13:46:05+00:00 https://arxiv.org/abs/1703.10293 Vaguery0, then the additive error has to be $\Omega(\eps f)$. This surprisingly matches known upper bounds in the literature. (3) For weighted graphs, we provide matching upper and lower bounds for the single pair case. Namely, the size of the preserver is Θ(n2) for f≥2 in both directed and undirected graphs, while for f=1 the size is Θ(n) in undirected graphs. For directed graphs, we have a superlinear upper bound and a matching lower bound. Most of our lower bounds extend to the distance oracle setting, where rather than a subgraph we ask for any compact data structure. ]]> network-theory robustness rather-interesting algorithms computational-complexity graph-theory to-write-about to-simulate consider:looking-to-see consider:feature-discovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:2475359bbfb8/ 2020-06-13T21:22:45+00:00 https://arxiv.org/abs/1709.04764 Vaguery machine-learning representation interpretability to-understand graphs network-theory neural-networks https://pinboard.in/ https://pinboard.in/u:Vaguery/b:2462e88e793e/ 2020-05-21T12:00:24+00:00 https://arxiv.org/abs/1601.02284 Vaguery network-theory communication rather-interesting to-simulate consider:agents consider:genetic-programming consider:collective-behavior https://pinboard.in/ https://pinboard.in/u:Vaguery/b:8c2c2f922b7c/ 2020-05-09T12:01:22+00:00 https://arxiv.org/abs/1902.06684 Vaguery compression network-theory rather-interesting algorithms approximation to-write-about to-simulate consider:feature-discovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:d641788df015/ 2020-05-04T11:54:41+00:00 https://arxiv.org/abs/1707.00083 Vaguery graph-theory network-theory probability-theory rather-interesting looking-to-see simulation feature-construction to-write-about to-simulate consider:variation consider:inverse-problem https://pinboard.in/ https://pinboard.in/u:Vaguery/b:dc0a1c70540d/ 2020-01-27T12:25:20+00:00 https://arxiv.org/abs/1611.06135 Vaguery graph-theory network-theory metrics a-picture-would-be-useful-about-now to-write-about to-illustrate FFS-make-a-picture https://pinboard.in/ https://pinboard.in/u:Vaguery/b:3e26e644267a/ 2019-11-25T23:14:52+00:00 https://arxiv.org/abs/1804.00267 Vaguery rather-odd neural-networks alternative-computational-substrates optical-computing network-theory to-understand https://pinboard.in/ https://pinboard.in/u:Vaguery/b:f3740339c789/ 2019-11-24T23:24:42+00:00 https://arxiv.org/abs/1304.1909 Vaguery 0, where R is part of the query. We also introduce the minimum eccentricity feed-link problem defined as follows. Given a network G with geometric edge weights and a point p that is not on G, connect p to a point q on G with a straight line segment pq, called a feed-link, such that the largest network distance from p to any point in the resulting network is minimized. We solve the minimum eccentricity feed-link problem using eccentricity diagrams. In addition, we provide a data structure for the query version, where the network G is fixed and a query consists of the point p. ]]> network-theory computational-geometry feature-construction rather-interesting optimization to-simulate to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:307d7d1433da/ 2019-11-24T13:38:29+00:00 https://arxiv.org/abs/1411.3796 Vaguery wait-you-mean-like-a-bak-sneppen-model? network-theory small-world le-sigh robustness to-simulate to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:b16b8fc276ae/ 2019-11-23T17:23:56+00:00 https://arxiv.org/abs/1709.07715 Vaguery network-theory probability-theory algorithms rather-interesting approximation consider:feature-discovery consider:performance-measures https://pinboard.in/ https://pinboard.in/u:Vaguery/b:96eb09726083/ 2019-11-03T11:43:20+00:00 https://arxiv.org/abs/1605.06386 Vaguery network-theory robustness mechanism-design small-world social-networks security dynamics planning to-simulate to-write-about feature-construction looking-to-see consider:online-learning https://pinboard.in/ https://pinboard.in/u:Vaguery/b:5d8811072edf/ 2019-10-26T12:42:46+00:00 https://arxiv.org/abs/1810.02016 Vaguery combinatorics counting rather-interesting probability-theory data-analysis data-mining graph-theory network-theory hypergraphs to-write-about to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:5d0e64d5a30a/ 2019-08-18T11:51:31+00:00 https://arxiv.org/abs/1907.03902 Vaguery network-theory rather-interesting robustness looking-to-see to-write-about to-understand feature-construction consider:causal-gp-dynamics https://pinboard.in/ https://pinboard.in/u:Vaguery/b:2a1ba7f36fb4/ 2019-07-24T11:09:19+00:00 https://arxiv.org/abs/1809.09561 Vaguery social-networks feature-construction rather-interesting social-engineering network-theory to-understand to-write-about epidemiology cultural-dynamics to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:efa09139274d/ 2019-06-03T10:47:59+00:00 https://arxiv.org/abs/1812.06038 Vaguery statistics explanation cause-and-effect to-understand looking-to-see network-theory https://pinboard.in/ https://pinboard.in/u:Vaguery/b:e723fa8c33f7/ 2019-02-23T12:00:29+00:00 https://arxiv.org/abs/1701.05999 Vaguery graph-theory rather-interesting feature-construction network-theory algorithms computational-complexity https://pinboard.in/ https://pinboard.in/u:Vaguery/b:c6324b7bf6bf/ 2019-01-03T12:46:35+00:00 https://mathsection.com/friendship-paradox/ Vaguery graph-theory rather-interesting network-theory to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:51c5b8eac765/ 2018-10-07T17:57:39+00:00 https://kiwihellenist.blogspot.com/2018/09/the-citation-problem.html Vaguery science-and-humanities-sittin-in-a-tree annexation-by-physics digital-humanities network-theory le-sigh academic-culture https://pinboard.in/ https://pinboard.in/u:Vaguery/b:b34536755064/ 2018-04-30T11:36:57+00:00 https://johncarlosbaez.wordpress.com/2018/04/27/props-in-network-theory/ Vaguery network-theory abstraction rather-interesting models-and-modes circles-and-arrows bond-diagrams to-write-about to-understand functional-programming category-theory https://pinboard.in/ https://pinboard.in/u:Vaguery/b:076a282db228/ 2018-03-19T09:42:05+00:00 https://arxiv.org/abs/1711.03532 Vaguery optimization network-theory mathematical-programming multiobjective-optimization rather-interesting operations-research utilities nudge-targets consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:932f58a9239d/ 2018-03-19T09:40:47+00:00 https://arxiv.org/abs/1709.04594 Vaguery community-detection network-theory algorithms looking-to-see clustering to-write-about the-pragmatics-of-the-thing https://pinboard.in/ https://pinboard.in/u:Vaguery/b:a1f44d95f317/ 2017-12-03T13:50:54+00:00 https://arxiv.org/abs/1704.00640 Vaguery graph-theory network-theory rather-interesting probability-theory symmetry to-write-about to-simulate https://pinboard.in/ https://pinboard.in/u:Vaguery/b:e1017af743d1/ 2017-12-03T13:39:12+00:00 http://complex.upf.es/~ricard/INFONETS.pdf Vaguery via:twitter complexology network-theory information-theory to-read hey-I-know-this-guy https://pinboard.in/ https://pinboard.in/u:Vaguery/b:77e4ed6b4aeb/ 2017-10-19T22:46:34+00:00 https://arxiv.org/abs/1509.07588 Vaguery network-theory feature-construction rather-interesting graph-theory representation nudge-targets consider:rediscovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:2be817d460e2/ 2017-10-15T16:12:26+00:00 https://arxiv.org/abs/1709.07308 Vaguery network-theory rather-interesting inference feature-construction algorithms statistics nudge-targets consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:b98af43ae4b1/ 2017-10-15T12:29:36+00:00 https://arxiv.org/abs/1611.01164 Vaguery network-theory nonlinear-dynamics emergent-design complexology rather-interesting to-write-about to-simulate nudge-targets consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:11ff4ab2caf6/ 2017-10-12T11:16:04+00:00 https://arxiv.org/abs/1604.03159 Vaguery network-theory clustering community-detection algorithms performance-measure rather-interesting consider:looking-to-see consider:performance-measures https://pinboard.in/ https://pinboard.in/u:Vaguery/b:9b8d5a0eb0dc/ 2017-09-27T11:41:21+00:00 https://arxiv.org/abs/1709.05454 Vaguery network-theory social-networks rather-interesting representation to-understand community-detection statistics algorithms https://pinboard.in/ https://pinboard.in/u:Vaguery/b:660150977fa2/ 2017-09-26T15:06:11+00:00 https://arxiv.org/abs/1706.08422 Vaguery food-webs ecology theoretical-biology graph-theory network-theory agent-based nonlinear-dynamics pattern-formation https://pinboard.in/ https://pinboard.in/u:Vaguery/b:f2b46e5105c0/ 2017-08-07T11:44:27+00:00 https://arxiv.org/abs/1707.06300 Vaguery systems-biology approximation simplification network-theory representation rather-interesting algorithms theoretical-biology philosophy-of-science to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:7a1c43d71478/ 2017-08-06T12:13:04+00:00 http://www.biorxiv.org/content/early/2017/05/25/142174?rss=1 Vaguery fitness-landscapes network-theory modularity rather-interesting boolean-networks to-write-about complexology simple-models nudge-targets evolvability https://pinboard.in/ https://pinboard.in/u:Vaguery/b:91c41af58b59/ 2017-08-01T10:35:36+00:00 https://arxiv.org/abs/1705.00055 Vaguery network-theory routing networks traffic rather-interesting to-write-about to-simulate computational-complexity https://pinboard.in/ https://pinboard.in/u:Vaguery/b:70bf45a74e15/ 2017-05-21T22:17:42+00:00 https://arxiv.org/abs/1201.6339 Vaguery epidemiology network-theory agent-based rather-interesting to-write-about simulation https://pinboard.in/ https://pinboard.in/u:Vaguery/b:485cefaa1dec/ 2017-05-20T10:31:03+00:00 https://arxiv.org/abs/1611.02617 Vaguery security graph-theory network-theory robustness algorithms nudge-targets consider:higher-order-features https://pinboard.in/ https://pinboard.in/u:Vaguery/b:31d0d91c84ca/ 2017-05-10T11:45:04+00:00 https://arxiv.org/abs/1705.00241 Vaguery dynamical-systems coupled-oscillators network-theory rather-interesting to-write-about simulation consider:simple-examples nudge-targets consider:control-theory consider:feature-discovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:8f4432ec3b97/ 2017-05-09T11:55:01+00:00 https://arxiv.org/abs/1409.4178 Vaguery dynamical-systems network-theory coupled-oscillators emergent-design looking-to-see systems-biology nudge-targets consider:robustness consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:341f4061c2da/ 2017-05-09T11:37:55+00:00 https://arxiv.org/abs/1507.05249 Vaguery network-theory collective-behavior physics! coupled-oscillators simulation it's-more-complicated-than-you-think to-write-about nudge-targets consider:engineering-design https://pinboard.in/ https://pinboard.in/u:Vaguery/b:83e12270f733/ 2017-05-09T10:28:04+00:00 https://arxiv.org/abs/1705.02249 Vaguery voting network-theory SFI tutorial to-write-about evolutionary-economics agent-based https://pinboard.in/ https://pinboard.in/u:Vaguery/b:87e47ff3df81/ 2017-05-07T12:26:37+00:00 https://arxiv.org/abs/1607.08597 Vaguery network-theory feature-construction random-walks algorithms rather-interesting nudge-targets consider:approximation computational-complexity updated https://pinboard.in/ https://pinboard.in/u:Vaguery/b:4588f1a64351/ 2017-05-07T11:32:52+00:00 https://arxiv.org/abs/1705.00232 Vaguery network-theory epidemiology rather-interesting to-write-about nudge-targets consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:55346817e6a3/ 2017-05-03T09:13:33+00:00 https://arxiv.org/abs/1703.01187 Vaguery network-theory generative-models feature-construction dynamical-systems simulation parametrization to-understand consider:review https://pinboard.in/ https://pinboard.in/u:Vaguery/b:8d586b63c707/ 2017-04-29T11:32:56+00:00 https://arxiv.org/abs/1507.03067 Vaguery graph-theory network-theory clustering rather-interesting define-your-terms to-understand out-of-the-box philosophy-of-engineering feature-construction https://pinboard.in/ https://pinboard.in/u:Vaguery/b:39db3d227d2e/ 2017-04-26T11:29:31+00:00 https://arxiv.org/abs/1610.01861 Vaguery community-formation network-theory self-organization rather-interesting to-write-about consider:feature-discovery https://pinboard.in/ https://pinboard.in/u:Vaguery/b:cf972958cf31/ 2017-03-24T12:00:10+00:00 https://arxiv.org/abs/1612.08631 Vaguery network-theory feature-construction graph-theory random-walks rather-interesting nudge-targets consider:rediscovery consider:prediction-from-graph https://pinboard.in/ https://pinboard.in/u:Vaguery/b:69fcf1a62c47/ 2017-03-20T11:42:20+00:00 https://arxiv.org/abs/1605.08517 Vaguery network-theory self-organization graph-theory rather-interesting algorithms generative-processes to-write-about emergent-design nudge-targets consider:performance-measures consider:interestingness https://pinboard.in/ https://pinboard.in/u:Vaguery/b:c0814bf51c32/ 2017-03-08T13:01:02+00:00 https://arxiv.org/abs/1610.08672 Vaguery network-theory community-detection community-formation agent-based rather-interesting to-write-about feature-construction nudge-targets consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:53560ead42bc/ 2017-02-12T15:21:08+00:00 https://arxiv.org/abs/1610.01674 Vaguery phylogenetics rather-interesting network-theory review evolutionary-biology representation bibliography https://pinboard.in/ https://pinboard.in/u:Vaguery/b:cad25768eb2c/ 2017-02-12T12:08:27+00:00 https://arxiv.org/abs/1701.09097 Vaguery cheminformatics graph-theory representation network-theory hey-I-know-this-guy complexology https://pinboard.in/ https://pinboard.in/u:Vaguery/b:10745421fe29/ 2017-02-04T11:48:41+00:00 https://arxiv.org/abs/1701.02789 Vaguery nonlinear-dynamics network-theory engineering-design emergent-design probability-theory planning rather-interesting nudge-targets consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:99e8183b8c97/ 2017-01-24T12:14:09+00:00 https://arxiv.org/abs/1610.01961 Vaguery graph-theory pattern-discovery feature-extraction network-theory community-detection algorithms nudge-targets consider:looking-to-see computational-complexity https://pinboard.in/ https://pinboard.in/u:Vaguery/b:4ccb6c04e281/ 2017-01-12T21:45:06+00:00 https://arxiv.org/abs/1701.00898 Vaguery network-theory robustness rather-interesting stress-testing performance-measure consider:looking-to-see nudge-targets to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:4a3ed90bb996/ 2017-01-10T13:11:23+00:00 https://arxiv.org/abs/1511.05118 Vaguery sampling graph-theory network-theory rather-interesting approximation compressed-sensing nudge-targets performance-measure consider:looking-to-see to-write-about https://pinboard.in/ https://pinboard.in/u:Vaguery/b:832a2895df52/ 2016-12-06T14:23:46+00:00 https://arxiv.org/abs/1605.08146 Vaguery queueing-theory p2p network-theory simulation operations-research nonlinear-dynamics to-read to-simulate nudge-targets consider:looking-to-see https://pinboard.in/ https://pinboard.in/u:Vaguery/b:481f7e2e8f08/ 2016-11-24T11:42:59+00:00 https://arxiv.org/abs/1606.02421 Vaguery collective-intelligence gossip-algorithm network-theory machine-learning nudge-targets to-write-about consider:performance-measures https://pinboard.in/ https://pinboard.in/u:Vaguery/b:ea9cb472a331/